scn4ba (scn4b)


Basic Information

Item Value
gene id scn4ba
gene name scn4b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 332209 ~ 359609 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310388.1
ctctctctctctctctctctctctctctctctgactggaTCCTACTGCAAAGGAGAAAGAAGAGGTAGGCATTCACTGCAGGACTTATCCAGCTGAAAGGTCCCCACTCACCCCCaccccttcttttttcttctccgTACTGTGCTGTCAGTCCCACCTCACCCCTCGCTCTTCCGCTCGTCCCCATCCCACCCAAGAATTCCTTACTtccaagtcacacacacacactgacacactcactcacacacacacacacacgcgcactggAGGACTAAGCCAGAGGAAAGCAAGACAGACCGACAAACAAGAAAGCAGGCAGATGGACAAACGTGTGCACGGAAAAGTGGACATGGAGGTGTGGAGGACTAGAGGATCATTCCTGCACAGAAGCACAAGATCTGGTGATGGGGTCCATGCTAGCATAGTCATCACTCTTCTGATTGgGGTATGGTGTGCACAGGCATTGGAAGTATCAGTGGGGAAGGTTAGCTTTGTTGAGGTGATGAATGGTAGCTCTGTACTCTTACCTTGTACCTACAGTAGCTGTATTGGCATCAAGAACCTGTACTTCAACTGGAAGTATAATGACAATGGGACAATGGATAAGCTTTGTGAAGGAGTCATCCCAGCTGAGGGTTTGGAGCCCCATGTGACGATCTTCCATGAGCGTGTGATGTTCGTGGGCTCCAGTAAAGACAGTAACATCTCAGTCCTGCTGTGGAACGTCACCTTCGAGGATGAGGGCGAGTACACTTGCTTCGCCCGCAACCCCAAAGAGAAGAACCGAAACCACAGTGCCGTATTCAACCTCATCGTTGTTGACCAGCTTAAAGAAGTGGACAACACAGTGACGATAATCATTGTATCTGTGATCGGAGGGCTTATTGGGTTGATCATTATAGTCATGGCAATAAAGGCGGTGGTCGTCCATTTCCTCAACAAGGCCCAAGAGAAAAATAAAGAGTGCCTTGTGAGCTCTTCAGGAAATGACAACACAGAAAATGGCCTTTCAGGTTCCAAAGCAGACAACAAAGCATCACCAAAGGCATAAAAAAtaagtatatgtgtgtaaatgggCAGATGTGTGGATGCTAGATGTGAATATAGAGTTAAAGCTATAAATATGGACTGTTTTATCTTTAtggaaaacaaaatgttaatattaattaagaTATATTCTAGAAATTTGCTcaatatattttagaaatatttagtCTGATGTTTGGGCTGGATTGCACACCTTTTCACAACGCGTGGTTTACAAGGAGTTTAAatgtacagtgctgtgcaaaagtcttaggcacatgcaaaaaaaaaaaaatctgtaaagcaaagatgctgtcaacatttctattaaaaaaaatactataaagggCAGTAAACCGTAATAAATGTACAGACatttttgttgaaaaaataatgtctaaaaagctaaaatgtttctgtacttgaaatgcagaagtcataaaatatacatctataacaaaatttgtttaaaaagattAGAGTGTCTAAGACATTtaaacagtactgtatatacacacatacatacaaccaggtgacaaattaaaggaaaaacaaacaccaaGTGTTTTAGTAACAATTACTGTTATttctctatgtttttttttttctcacaaatcACACTACTGCCTGAGCATCATACTCTCTGAATGTTGAAGCACATTGAGAGCCAGTGGATCAATCTGAGTGACTGAATCTCCTGCCATCAATGAACTCTCTTTCAGAGTCACTTAGATCTTTTCCTCTTGTCTTCTTGATGGATTATGAAGGTGAACTGAGCATGCTCAGCACTGCGCTCGGTGAGACGTTAACTGCTTTAATGTACCAGTCTTTCTGCACTCATTTATTCAGAAAtatcctttaatttgtcacctgaaTTTGTTCATGTGTATATTCCCCTGGGAGTAATTCACATAAATTGCCTTTGGATTAAACATTAACCATAATGCAGCCCAGATATTAACCACCTTTATCTGTGAATCTGTGTGAGGTGTGAAGGGATATCCAGCCCAGAATCAGAAACAGTTTATTTGCAAACACATGTTCTGGAGGTCCAGTGCGCTGTCGTTAGAGAGTCTTCTCTgctccaacacacctgatttcacACACTAGTTATCCGAATTATTATGAAATCAGAGGTGAATTTGGTGTGTTAGAAAAGAGAAACTCTTTTAAGTACTGTGGACTTCCAGGGCAGCTTTAGTGTAATATccatgtttagaaaaaaaaaacaaaaaaaacacacgtgCCTGCTAATGCTTCAAACTTTTCTTGCTTTTAGGGAGTCTTTAAAACGCTATAAAAAC

Function

symbol description
scn4b Enables sodium channel regulator activity; transmembrane transporter binding activity; and voltage-gated sodium channel activity involved in cardiac muscle cell action potential. Involved in several processes, including cardiac muscle cell action potential; regulation of heart rate by cardiac conduction; and regulation of ion transport. Is intrinsic component of plasma membrane. Part of voltage-gated sodium channel complex. Implicated in long QT syndrome 10.

NR:

description
PREDICTED: sodium channel subunit beta-4

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K04848 SCN4B; voltage-gated sodium channel type IV beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310388.1 True 2330 mRNA 0.41 5 332209 359609

Neighbor

gene id symbol gene type direction distance location
LOC113544624 dscaml1,LOC107728164,LOC107752281 coding downstream 90206 148086 ~ 242003 (-)
trnae-cuc_27 NA coding downstream 100398 231740 ~ 231811 (-)
fkrp fkrp,LOC107699218,LOC107566082,LOC107752280,LOC107592673 coding downstream 280032 47324 ~ 52177 (-)
serpine2 serpine2,LOC100304922 coding downstream 302446 16322 ~ 29763 (-)
scn2b scn2b coding upstream 4289 363898 ~ 387663 (-)
zgc:172282 zgc:172282,LOC108277461,LOC108433964,LOC107758157,LOC107697541,LOC107749639,LOC107678250 coding upstream 35783 395392 ~ 464991 (-)
zgc:114130 LOC108278286 coding upstream 191406 551015 ~ 553472 (-)
trappc6bl trappc6bl,LOC108278287,LOC108433979,LOC107678240,LOC107561377,LOC107684201 coding upstream 207898 567507 ~ 572429 (-)
pnkp pnkp,LOC102779955 coding upstream 251415 611024 ~ 622612 (-)
G218024 NA non-coding downstream 73268 252132 ~ 258941 (-)
G218028 NA non-coding downstream 117238 214451 ~ 214971 (-)
G217401 NA non-coding downstream 259051 69744 ~ 73158 (-)
G218064 NA non-coding upstream 22139 381748 ~ 382304 (-)
G218066 NA non-coding upstream 29094 388703 ~ 411051 (-)
G218184 NA non-coding upstream 371753 731362 ~ 741843 (-)
G218185 NA non-coding upstream 371907 731516 ~ 736893 (-)
G218187 NA non-coding upstream 374008 733617 ~ 738218 (-)
dpf1 dpf1,LOC107672425,LOC107561370,LOC107749650,LOC107758770 other upstream 276006 635615 ~ 684458 (-)
numbl numbl,LOC107374161 other upstream 353286 712895 ~ 747257 (-)
G218214 NA other upstream 519163 878772 ~ 879183 (-)
mecom LOC108278348,LOC108269179 other upstream 595871 955480 ~ 1102884 (-)
G218265 NA other upstream 720679 1080288 ~ 1134018 (-)

Expression


Co-expression Network