LOC113532826 (LOC108277820)


Basic Information

Item Value
gene id LOC113532826
gene name LOC108277820
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 9823069 ~ 9835087 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310470.1
ttttaaaaaggaaatcaCAAATCAGAGATTGGCACTCGCAGTGGACTTCATCAAGATGGTCAGCCGAGTTCACACTGGGATAAGGCTACTGTTAGCCTGCTTCCTCTTTCATTCTGTTTATGGACAAACCTCAGGACCATATTTCATGGTGACATTTCCTGCAGTGATAGAGTCTGGCTCTAGTGCCAACTTTTGTGTTAGTCTTCTGAAGCCTAATGGGACTCTACAAATGAACATTTATCTGGTTCACAACAACCGGATCAGAACTCTTTTACAAGAGACAGTGGAAAAGGAGATTCACCACTGCTCTCATTTTGAGGCTCCACAGGTTGAGGGTCAATCAGTGCAGGAGATCAAAGTAGAAGTCAAAGGTGAAAGTTTTAAGAtgacagagaaaaggaaagtgATGTTTAAATCCTACAACACATTGGTATTTATTCAGACTGATAAACCCATCTACAATCCAGGCCAAACAGTGAATTTCAGAATTGTCACTATGGATTCTAATTTTATTCCCCTGGAACAAAGGTACACCACAGTAATTATTGAGGATAATAATCGTAACAGGATTGGTCAGTGGACAAATGTGTCCTCGACAGGCCTGATACTGCAGCTTTCTCATGAGCTAAATGCTGAGGCTCCACAGGGATATTATATATTATCTGCTAGCATTGGAAATAGGTTGATCTCACACTATTTTAAGGTGCAAAAGTATGTTTTACCCAAGTTTGAGATTACAGTAAAAACACCAGAAGAACACAGTGTCGGTGAGGAGGAACTGAAGCTGGAGGTTTGTGGAAAGTACACGTATGGACAGCCAGTACCTGGTGAAGCACTGGTGCAAGTGTGTCGTAAATTTAAGCAGAATTATCTTCATCGTGAGGAAGCCAAAATGATTGCGCCGTGCCTGGTTGAAACAGTGGAGATGAGTCAGACTGGTTGTGCCTTCcttacattaaatgtatcaACTTTCATGAATTCcaaatttgaaaataattttgaaaaccGTCTTAATGCTACAGTTACACTAACAGAGGAGGGAACAGaaTTTTCCATGGTAAAATCTGTAATCATAACACTCACTCACCAAATCGGTAAAGTGGAACTTGTGGATTTACCAAAAAACTTTGAACGGAAGAAGGTTATAGAAGGAagaATTAAAGTTACTACCTTCAGTGGAAGACCAATTCCTAACAAGAAGGTGTATCTTTCAGAAGGTGAACGGTGGTCTCAAAAGTTACTACTTAATCTTACTACAGATAGTGATGGATTAGCAAACTTCTCAATCGCTTCACCTGAACATCCTGCAACAGAGATAATATTGCGGGGAAGTGATTATCCAGTGGTCAAATACCACACATACAACATACCATTCTTTTCAACTGCTGATGCACGTATACAGCTGCCCCAACCGGCCACAGCTTACAAACCAGTATTCAGTGGACTGTCAATAGAGAGCTCAGAGGAACCCTTTAATTGTGGTGCTGAAATTCCCATAACCATTAACTACTATATTGTTGGGGAAACTACTGAAAATTACAGCATCAGTCTTATATACATTGTCTTATCTAAAGGAGCCATAGTCCATCATGGTCATGAGAAAGTTGAAGTGGAAGACTCTGCAGAtgtcagaaaaggaaaaatctcATTCAAACTATCTGTTGTTGCTGAGCTGGCTCCTGTAGTGCAGGTGGTGGTGTACTCTGTCCTTCCCAGTGAGAACATCATCGCTGCTAGCAAGAAttttaatgtggaaaaatgtttcagaaataaGGTTTCGCTACAGTTCTCTCCCTCTAAGGCAGTTCCTGGGGAGAAGAACACTCTCGAGCTCACAGCTCATCCTGGTTCACTCTGTGGCCTCAGTGTTGTAGATCAGAGTGTGTTCATCTTGGAGCCAGAAAAGCATCTAAACACTAAAAAGATATTTAATCTGTTGCCAGTGACATCGGTATTGGATTATCCCTATGCGCTTGAAGATTATCGAAGGTGCTGGCGTGGTAAACCTCAACGAAATGGCCATACTTATAATACATTAAAGGGAGTGGGGCTGAAGATGGCAACAAATTTGGCTATTAGAGTTCCTCATTGTTTGGGGTATAGACGCATGAAATTATCATCGCATACATGGAGGGCGTGAGTTTCATCATCCTAGAGAGACATCACCTAGAAGAGACATTGAGACAGTTCGCAAATTCTTCCCAGAAACATGGCTATGGCAACTGTCTGAAGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310470.1 True 2236 mRNA 0.41 17 9823069 9835087

Neighbor

gene id symbol gene type direction distance location
LOC117599039 LOC108277821,LOC108277820,LOC108277479,LOC108277480,LOC108277478,LOC108411099,LOC108411100,LOC108411104,LOC108411102,LOC108411101 coding downstream 382 9717745 ~ 9822687 (-)
nlrx1 nlrx1 coding downstream 148623 9664911 ~ 9674446 (-)
pdzd3a LOC108277664 coding downstream 158435 9655582 ~ 9664634 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding downstream 174830 9636571 ~ 9648239 (-)
kmt2a kmt2a coding downstream 187367 9594954 ~ 9635702 (-)
LOC113532742 LOC108277821,LOC108277480,LOC108277478,LOC108277820,LOC108277479 coding upstream 4229 9839316 ~ 9866331 (-)
ulk2 ulk2,LOC107717276,LOC107657566 coding upstream 205655 10040742 ~ 10070727 (-)
sgsm2 sgsm2,LOC108277483,LOC107728220 coding upstream 328320 10163407 ~ 10208971 (-)
tnfaip1 tnfaip1,LOC108277497,LOC108425816,LOC107728221,LOC107597551,LOC107657549,LOC107586309,LOC107729096,LOC107662792 coding upstream 376499 10211586 ~ 10218371 (-)
supt5h supt5h,LOC107657557,LOC107586261 coding upstream 485744 10320831 ~ 10342885 (-)
LOC117599044 NA non-coding downstream 16560 9802492 ~ 9806509 (-)
LOC117599042 NA non-coding downstream 64103 9758158 ~ 9758966 (-)
G222852 NA non-coding downstream 779318 9037480 ~ 9043751 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 1274695 8544912 ~ 8548374 (-)
G222591 NA non-coding downstream 1331785 8464576 ~ 8491284 (-)
LOC117599021 NA non-coding upstream 51929 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 96269 9931356 ~ 9978560 (-)
G223408 NA non-coding upstream 200655 10035742 ~ 10035982 (-)
G223410 NA non-coding upstream 203757 10038844 ~ 10039358 (-)
G223437 LOC108277491,LOC108425811,LOC107662794,LOC107729125,LOC107586255 non-coding upstream 246494 10081581 ~ 10082117 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 110010 9677259 ~ 9713059 (-)
G222809 oaf other downstream 876170 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 1344157 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 2359570 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 3169651 6619172 ~ 6653418 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 472963 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 873165 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 1353163 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 2553779 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 2600119 12435206 ~ 12638725 (-)

Expression


Co-expression Network