LOC117599039 (LOC108277821,LOC108277820,LOC108277479,LOC108277480,LOC108277478,LOC108411099,LOC108411100,LOC108411104,LOC108411102,LOC108411101)


Basic Information

Item Value
gene id LOC117599039
gene name LOC108277821,LOC108277820,LOC108277479,LOC108277480,LOC108277478,LOC108411099,LOC108411100,LOC108411104,LOC108411102,LOC108411101
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 9717745 ~ 9822687 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310471.1
GTTCAGCTCACTGTATTTCAGCCCTTCTTCCTGGAGCTCTCGTTGCCTTACTCCATTATCCGGGGAGAGGTTTTTGAGCTGAAGGCCACTGTCTTCAATTATCTTTCCAAATGCATTATGGTTAAAGTGACTCCAGCCTCTTCCTCAGACTACACTCTGGAACCTTCTTCTGATGGCGAGTATTCATCCTGCCTGTGTGCAAATGGCAGAAAGACCTTCAAATGGACTCTGATTCCCACTGTGCTTGGAGTCTTGAAAGTGACAGTGAGTGCAGAGGCAGAACAATCCCAGACAGTGTGTGACAATGAGATTGTGAGTGTTCCAGAAAGAGGCCGTATTGACACAGTTACACGAAGCCTGATTGTACAGGCTGAAGGAACTGAGAAGACAAAGAGCCAGAGCTGGTTATTATGTCCACAGGGCAACAGTGTCTCTGAAGAGTTGGAGCTGATTCTTCCTGAGGATGTAATAGAGGGATCAGCACGAGCTTCTGTCTCAGTACTTGGAGATATACTTGGCCGTGCATTAAAAAATCTGGATGGGCTGCTAAAGATGCCATATGGGTGTGGTGAACAAAACATTGCTCTCCTTGCCCCCAATATCTACATTCTTCAGTATCTAGAGAGCACTGAGCAGCTCACCACAGCCATCCGTGAGAGGGCTACTGGTTTCCTTAAGAGTGGATACCAGAGGCAACTtaactataaacatataaatggtGCCTATAGCACATTTGGCAGGGGAGAGGAGAACACATGGTTAACTGCTTTTGTCTTGAGGACGTTTGGCAAAGCACAACGTTACATCTTTATTGATCCAAAAAACATTAACAGTGCAAAGCAATGGCTCATAAGTATGCAGAGATCAGATGGCTGTTTTATAAGAAAAGGTAGTTTGTTCCATAACAGAATGAAGGGTGGTGTAAATGATGATGTGACTATTACTGCCTACATCACTGCATCGTTGCTTGAATTGGGTAATACAGTCCAGGATCCTGTTGTGAATAAAGGACTGTTGTGCCTCAAGTCTTCTGTTGGTGACCTGGCAAACACCTACACCACTGCACTGTTGGCCTACACTTTCAGTCTGGCTGGAGAGAAAGAAGTTCGGGAGCACCTACTACAAGAGTTAAAGAATGTTGCCATTTCAGGAGATGGTCGGCTTCACTGGTCTCAGTCAGCATCAGATGACTCTGAGGCCTTGTCAGTGGAAATCAGTTCCTACGTGCTGCTAGCTGTTCTCACTGCAGGTCAACTCTCTACTGCTGATTTGGGATATGCTAATAGGATAGTCAGCTGGCTGGTGAAGCAGCAAAATCCTTATGGAGGCTTTTCATCCACCCAGGACACAGTTGTGGCCCTCCAAGCTCTGGCTCTGTACTCCACTAAAGTGTTCAGCTCAGACGGCTCTAGCACAGTAACTGTAAAGTCAGCAGATGGACACAGTCACAACTTTGATGTGAACCAGAACAACAAGTTACTGTACCAAGAAAGATCATTGCAGGATGTTCCTGGCAAATACAGCATTGAAGTGATGGGCTCCAGCTGTGTGTCAGTGCAGACAGCACTTTTCTACAATGTCCCCACACCTACTGAAACTAGTACACTGAGCATCACGGCTAAGACAGAGGGAAACTGCACAAAATCATTTGGACAAACTTTGCTTCTTAAGTTCACTGTTGGATATACTGGGACACTTAACAACACTAACATGGTCATAGTGGACATAAAACTCTTATCAGGGTTCACAGCAGATCCTGGTGAACTGAAAAAAGGCATTTTGGTGGAACGGGTTGATTCTAAAGATGACCATATTATCATGTATATCAAAGAGCTCCCTAGGAATATTCCTGTCAACTATGAGCTACACATTAAACAGGTGCTTCCTGTCAAGAATCTCAAGCCAGCGGTGATCAAAGTTTATGATTACTACCAAACAAGTGACCAGTCTGAGACGGAGTACACCTCCCTGTGCGTGTAGAGTTTCACTTTCGAATTGAAGATGCAGAAAATCCTTTGTTTTAGGTTTTGATTAAGATTTCTTgctgttgaaataaaaatacatttcaaatgcC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310471.1 True 2074 mRNA 0.44 18 9717745 9822687

Neighbor

gene id symbol gene type direction distance location
nlrx1 nlrx1 coding downstream 43299 9664911 ~ 9674446 (-)
pdzd3a LOC108277664 coding downstream 53111 9655582 ~ 9664634 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding downstream 69506 9636571 ~ 9648239 (-)
kmt2a kmt2a coding downstream 82043 9594954 ~ 9635702 (-)
c1qtnf5 c1qtnf5,LOC107690457,LOC107601727 coding downstream 128453 9585644 ~ 9589292 (-)
LOC113532826 LOC108277820 coding upstream 382 9823069 ~ 9835087 (-)
LOC113532742 LOC108277821,LOC108277480,LOC108277478,LOC108277820,LOC108277479 coding upstream 16629 9839316 ~ 9866331 (-)
ulk2 ulk2,LOC107717276,LOC107657566 coding upstream 218055 10040742 ~ 10070727 (-)
sgsm2 sgsm2,LOC108277483,LOC107728220 coding upstream 340720 10163407 ~ 10208971 (-)
tnfaip1 tnfaip1,LOC108277497,LOC108425816,LOC107728221,LOC107597551,LOC107657549,LOC107586309,LOC107729096,LOC107662792 coding upstream 388899 10211586 ~ 10218371 (-)
G222852 NA non-coding downstream 673994 9037480 ~ 9043751 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 1169371 8544912 ~ 8548374 (-)
G222591 NA non-coding downstream 1226461 8464576 ~ 8491284 (-)
G222522 NA non-coding downstream 1475569 8241064 ~ 8242176 (-)
G222391 NA non-coding downstream 1520538 8196805 ~ 8197207 (-)
LOC117599021 NA non-coding upstream 64329 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 108669 9931356 ~ 9978560 (-)
G223408 NA non-coding upstream 213055 10035742 ~ 10035982 (-)
G223410 NA non-coding upstream 216157 10038844 ~ 10039358 (-)
G223437 LOC108277491,LOC108425811,LOC107662794,LOC107729125,LOC107586255 non-coding upstream 258894 10081581 ~ 10082117 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 4686 9677259 ~ 9713059 (-)
G222809 oaf other downstream 770846 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 1238833 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 2254246 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 3064327 6619172 ~ 6653418 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 485363 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 885565 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 1365563 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 2566179 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 2612519 12435206 ~ 12638725 (-)

Expression


Co-expression Network