LOC113544557 (parl)


Basic Information

Item Value
gene id LOC113544557
gene name parl
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1592593 ~ 1597472 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310478.1
CATGAGGTAGgcggaagtgggcgtggtctccGCGGTAACCCGGAAGCGGACGGCGGCAGGGATCATGGCGTGGAGAGGATGTGTAGTCAGATGGGTTAAAGAGGATTTTATCAGTCAGACGAGTCGGAGAAACGGGTTTATGCTCCTGTACCAGCAGAGATGCGGCTTTCGGAAAGTGGCGAAGAGGGTGGAGCCAAAGATGGAGGTGGAGCAAGCAGAGTTGATACAGAAAAAAGGCGGGACTCCGGTGATAGAGCCGCCCACTCCATCGCAACCTGAGAGATCACTGCGCAGACTGGTCAAGCCTCTGGTGTTCACTATAGGGTTTACAGGCTGCTCGTTCGGCACGGCAGCAATCTGGCAGTACGAGAGTCTGAAATCTCGCGTTCAGAGCTACTTTGATGAGGTGCGAGCTGATTGGCTGGACAAACTGCGACCACAGAAACAAGGAGACCTACgcaaacagatcAATCAGTGGTGGAACAGTCTGAGTGAAGGACAGAGGAGTGTAAcaggcatCATAGCTGCTAATGCGCTGGTGTTTTGCTGTTGGAGAATTCCGTCTCTGCAGAGATCCATGGTGAGGTACTTCACCTCTAACCCCACCTCCAgtgcACTGTGTTGGCCCATGCTGCTGTCCACTTTCAGTCACTACTCATTCTTCCACATGGCGGCCAACATGTATGTGTTGTGGAGTTTCTCCTCCAGCGCAGTGAGCATGATGGGAAAGGAGCAGTTCATTGCTGTCTATCTGTCCGCaggtgtGATCTCCTCATTTGCTAGCTACGTGTGTAAAACGCTAACAGGGAGACTGGGGCCTTCGTTAGGGGCGtctggtGCTATTATGACCGTGCTCGCTGCCGTCTGCACGAAGATCCCTGAAGCTAAACTGGCCATCGTCTTCCTCCCTATGTACACCTTCACTGCAGGAAATGCACTGAAAGCCATCGTTGCCCTGGATACAGCAGGTTTGATTATGGGATGGCGCTTTTTTGACCACGCTGCTCATTTAGGAGGCGCTCTGTTTGGCATctggtACATCTTCTACGGTCATGAGCTGATCTGGAAGAACAGGGAGCCGCTGGTGAAAATGTGGCACAACTTCAGGACGCGAGGACCCGGCACCGGCGGCAACGGATCCCTCTAGAGcatcatgggaaaaaaatattacaccGGATCAGCATAATAAACACCGGTTTATTAGGAatgagtgtgtacagtgtgcgtgt
>XM_034310479.1
CATGAGGTAGgcggaagtgggcgtggtctccGCGGTAACCCGGAAGCGGACGGCGGCAGGGATCATGGCGTGGAGAGGATGTGTAGTCAGATGGGTTAAAGAGGATTTTATCAGTCAGACGAGTCGGAGAAACGGGTTTATGCTCCTGTACCAGCAGAGATGCGGCTTTCGGAAAGTGGCGAAGAGGGTGGAGCCAAAGATGGAGGTGGAGCAAGCAGAGTTGATACAGAAAAAAGGCGGGACTCCGGTGATAGAGCCGCCCACTCCATCGCAACCTGAGAGATCACTGCGCAGACTGGTCAAGCCTCTGGTGTTCACTATAGGGTTTACAGGCTGCTCGTTCGGCACGGCAGCAATCTGGCAGTACGAGAGTCTGAAATCTCGCGTTCAGAGCTACTTTGATGAGGTGCGAGCTGATTGGCTGGACAAACTGCGACCACAGAAACAAGGAGACCTACgcaaacagatcAATCAGTGGTGGAACAGTCTGAGTGAAGGACAGAGGAGTGTAAcaggcatCATAGCTGCTAATGCGCTGGTGTTTTGCTGTTGGAGAATTCCGTCTCTGCAGAGATCCATGGTGAGGTACTTCACCTCTAACCCCACCTCCAgtgcACTGTGTTGGCCCATGCTGCTGTCCACTTTCAGTCACTACTCATTCTTCCACATGGCGGCCAACATGTATGTGTTGTGGAGTTTCTCCTCCAGCGCAGTGAGCATGATGGGAAAGGAGCAGTTCATTGCTGTCTATCTGTCCGCaggtgtGATCTCCTCATTTGCTAGCTACGTGTGTAAAACGCTAACAGGGAGACTGGGGCCTTCGTTAGGGGCGtctggtGCTATTATGACCGTGCTCGCTGCCGTCTGCACGAAGATCCCTGAAGCTAAACTGGCCATCGTCTTCCTCCCTATGTACACCTTCACTGCAGGAAATGtgagattcacacacacacacacacacacacacacacacacacacacaaagacattcatTCACAACAACACCtgcagagacacCACAAAAGTAACCCAGTGATCTTTAATGcaaaat

Function

symbol description
parl Enables endopeptidase activity. Involved in several processes, including membrane protein proteolysis; regulation of protein targeting to mitochondrion; and regulation of reactive oxygen species metabolic process. Located in mitochondrion. Implicated in Leber hereditary optic neuropathy; coronary artery disease; hyperinsulinism; myopia; and type 2 diabetes mellitus. Biomarker of breast carcinoma and type 2 diabetes mellitus.

GO: NA

KEGG:

id description
K09650 PARL, PSARL, PCP1; rhomboid-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310478.1 True 1229 mRNA 0.53 10 1592593 1597472
XM_034310479.1 False 1051 mRNA 0.52 9 1593078 1597472

Neighbor

gene id symbol gene type direction distance location
cldn15lb cldn1 coding downstream 4138 1581397 ~ 1588455 (-)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 11564 1560569 ~ 1581029 (-)
sagb LOC108411842,LOC107756220,LOC107670108,LOC107689591,LOC107600819 coding downstream 34289 1546943 ~ 1558304 (-)
LOC113544537 dgkd coding downstream 51871 1521327 ~ 1540722 (-)
ilkap ilkap,LOC107725757,LOC107756217 coding downstream 72778 1514973 ~ 1519815 (-)
fzd4 fzd4 coding upstream 85293 1682765 ~ 1690584 (-)
pdgfd pdgfd coding upstream 201208 1798680 ~ 1813081 (-)
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding upstream 326196 1923668 ~ 1946156 (-)
cwf19l2 cwf19l2 coding upstream 352509 1949981 ~ 1965960 (-)
trnag-ucc_22 NA coding upstream 371940 1969412 ~ 1969483 (-)
G218695 NA non-coding downstream 15382 1576881 ~ 1577211 (-)
LOC113544681 NA non-coding downstream 24402 1546445 ~ 1568191 (-)
trnag-ucc_16 NA non-coding downstream 96760 1495762 ~ 1495833 (-)
G218377 NA non-coding downstream 99188 1492400 ~ 1493405 (-)
G218347 NA non-coding downstream 235257 1328138 ~ 1357336 (-)
LOC117599072 NA non-coding upstream 5939 1603411 ~ 1616938 (-)
G218720 NA non-coding upstream 27012 1624484 ~ 1682087 (-)
G218734 NA non-coding upstream 78292 1675764 ~ 1676214 (-)
G218768 NA non-coding upstream 172743 1770215 ~ 1770452 (-)
G218773 NA non-coding upstream 180274 1777746 ~ 1786974 (-)
trnag-ucc_18 NA other downstream 95182 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 95487 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 437893 1154410 ~ 1154700 (-)
G218265 NA other downstream 458575 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 489709 955480 ~ 1102884 (-)
scaf4b LOC108411133 other upstream 683929 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1015385 2612857 ~ 2629901 (-)
G219642 NA other upstream 1290435 2887907 ~ 2963350 (-)
G219651 NA other upstream 1309854 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 2129905 3727377 ~ 3807114 (-)

Expression


Co-expression Network