txndc17 (txndc17,LOC107661118,LOC107727907)


Basic Information

Item Value
gene id txndc17
gene name txndc17,LOC107661118,LOC107727907
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6158848 ~ 6161315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310492.1
GTTGTTTAGTCACTGACATCCTGGTGACTGTGTGGAAGACTACACACAGACTTTATCTTCATCTCAACCTCACTGCAGAGTCATTACACACTCGTGAGTGTTGATAACATGGCTATGTATGAGCAAGTCAGTGTCCACGGGTATGAAGAATTCTGCAAAGCTGTGgctgagagaaaaggaaaagatgtgtttgtgtacttCAGTGGCGACAAAGATGAGCAAGGGAAGAGCTGGTGTCCAGACTGTGTGAAAGCTGAGCCTGTGGTTCGGGGGGAAATGGCTCATCTTCCTGAAGGCTCAGTCTTCATCTACTGCCAAGTGGGAGACCGGCCATACTGGAAAGATCCGAACAACGACTTTAAGAAGACTCTAAAGCTCACGGGAGTTCCTACTCTGCTACGCTACGGCACACCACAGAAGCTGGTGGAGGAACAGTGTTTCAATGCGAACCTGGTGCGCATGATGTTCACAGAAGATTAATGCCTCATGCTGGCGTCTTTACACACATTGAGCTGtactttttcagttttttgcTACCATGTAATCAGGCACATAcagagtatatgtgtgtgtgtgtgtgtgtgtgtgttgtcactGTGAGATGAAGGACAAAGTCTCATTCTGGGTCAGCATTCTGTATCTGAAGTGTCATAAAAGCCTTGATTCTTCTGGAAAAGGCAGTATGTGCTCACCAAATCACTGTAtaagcaaacacaaatattctATGCTTTCAGTAGTGAGAATTTCAATTTTTGTGCAACCAAACACAAGAAATAATGCAAAATCATTTGCAATCGCAGATTGTCATTTGTAATtgtgtacaaaataaaatgcttatGAACAGCCGATGGTA

Function

symbol description
txndc17 Predicted to enable protein-disulfide reductase (NAD(P)) activity. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human TXNDC17 (thioredoxin domain containing 17).

NR:

description
PREDICTED: thioredoxin domain-containing protein 17

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310492.1 True 853 mRNA 0.43 4 6158848 6161315

Neighbor

gene id symbol gene type direction distance location
nxn nxn,typx coding downstream 1997 6094670 ~ 6156851 (-)
glod4 glod4,LOC102784280 coding downstream 71758 6083740 ~ 6087090 (-)
LOC113532842 kiaa0100,LOC107661106,LOC107727920 coding downstream 78200 6049453 ~ 6080648 (-)
rskra LOC108277445 coding downstream 111242 6035073 ~ 6047606 (-)
aldoca aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247 coding downstream 125337 6029246 ~ 6033511 (-)
fam222bb LOC108277976 coding upstream 20733 6182048 ~ 6188370 (-)
caln1 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107659935,LOC108443712,LOC107672359,LOC103034584 coding upstream 71933 6233248 ~ 6298950 (-)
tyw1 LOC108278267,LOC108443711,LOC107716137 coding upstream 144043 6305358 ~ 6382839 (-)
zgc:103681 LOC108277991,LOC108443709,LOC103035104 coding upstream 224864 6386179 ~ 6394307 (-)
hip1 hip1,LOC107714882,LOC107659933,LOC107672373 coding upstream 285810 6447125 ~ 6488585 (-)
G221214 NA non-coding downstream 66414 6091913 ~ 6092434 (-)
G221068 NA non-coding downstream 288221 5870401 ~ 5870627 (-)
G221026 NA non-coding downstream 363395 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 654906 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 669840 5488775 ~ 5489008 (-)
G221245 NA non-coding upstream 41749 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 164776 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 255567 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 352513 6513828 ~ 6514965 (-)
G221618 NA non-coding upstream 526274 6687589 ~ 6688311 (-)
dynll2a dynll2a,LOC107554284 other downstream 134495 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 354875 5797928 ~ 5803973 (-)
G220990 NA other downstream 447957 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 559473 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1187329 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 457857 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1231100 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2243514 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2779703 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3515944 9677259 ~ 9713059 (-)

Expression


Co-expression Network