synrg (synrg)


Basic Information

Item Value
gene id synrg
gene name synrg
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5939052 ~ 5975719 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310538.1
ATGGCGCTCCGGCCCGGATCAGGGGGAGGTGGCAGTTTCATGTACCCTGTTGGAGGGGGACTTGGACCACCACAAGGAATGATGCCCatgcagcaacagcagcagcaacagggATTTCCCATGGTCCCAGTCATGCAGCCCAACATGCAAGGCATGATGGGAATGAATTTTGGAGCCCAGATGCCTGCTGGACCAATGCCCATGCAGGGTGGCATGGCCATTGGGATGCAGGCACCAGGCATGCAGTTCATGGGTCAACCCCAGTTCATGGGAATGAGGGCCACGGGGCCACAGTACCCTGCTGACCTGCAGAAACAGATGGCTGAGGAGCACCAAAAGCGCttggagcagcagcagcgcaTGCTAGAGGAAGATCGGAAGAGGAGGCAGTTTGAAGAGCAGAAGCAGAAACTGCGCCTCCTGAGCAGCGTCAAACCCAAAACTGGAGAGAAGAGTCGAGATGATGCACTGGAAGCCATAAAAGGAAATTTAGATGGCTTCAGCAGAGATGCAAAGATGCATCCCACTCCATCTTCTCAGTCTAAGAAACCAGACTCATCGCCATCTCACTCCTCTGTCCCACCACACTCCCTCTCCCCTGCTTTCGCAGAGGAGGATGATGAATTTAGTGACTTTATACAGGGCCCTGTTGAGGCTTCCTTTCCCAgttcctccctccctctgccttcctcttcctcaggtGTCAATAGGTCACCTCTAGAGGCAGGGCCTGGGCAGCGGCCCTCTTCCAGCCCTCTCCCCTTTTCCCTTGCTCCCTCTCTGCCcacactcactgtccctcaccaCTCTTCTGTCATCTCCAGCTCCCAATCTACATTCCAAGGCCCATCTCTGGAGGAGAAGCTCTTCTCCTCGTGCGATCTAACAGCCGATAAGAAGGCTCAGGTTAACTTTAAGCCCTGCCGGGCCATGTCTGAGCTGGCTCCCAGAGCTCAGGTATCAGTATGCTTCCAGAGTAGCTCCAGAGCTCGCAACTGGGCCCAGTGCTCCGATGACCTCAGTGCTACCTTCACAGTGGAGAAGACTCCTGAGCCTCCAACTGCTTCCCCAGCTCCCACAGCAGCAGAAGCTCAGCCCCATCAGGCATCAAGTGCTAGTGGTGTTGGTGTCTATCCCCAACAAGAAATGCAGTCCTTGTTGCCAGCCTGGCTCTACAATGACTCTCTTGTTCCAGAGATGTTCAAGAAGGTTCTAGAGTTTACAATGACTCCAGCAGGCATCGACACAGCCAAACTCTACCCTATCCTGATGTCATCTGGTCTGCCCCGAGAGGCTCTGGGTCAGATCTGGGCCTCAGCTAATCGTACCACACCAGGCAAGCTGACCAAGGAGGAGCTGTACACCGTTCTGGCCTTGATTGGAGTAGCACAGAGTGGGCTTCCAGCGATGAGCCTGGACATCCTGAGTCAGTTCCCTACCCCTCCAGTGCCCAACTTGCCTGCAATGGCTATGGCTATGCCAGCCGTCCTGACACACCAGCAGCCCCTAATGCCCCCTGCCACGCCTGCCGTCATGCCCATGGCCTCCAACTCACTGGCACAACCTTCCAACAGCTTCATCGCCAATTTCCCTCCTGTCCAGGGAACCAAAGTGGAGGATGATGATTTCCAGGACTTTCAGGAGGCTCCAAAAGCTGGAGATGATTCATTCACAGATTTTCAAGGAGAGACAGGAGGAACATTCCCAACTGTAACCTCCTCTCAAAGCAGcattCCAGTCATGCTGACTCCAGTGTCTGGCTCTTCATCCTCTTCTACCTCTGATAAGTATGCAGTGTTTAAACACCTGTCAGTGGAGCATCCTACAGAACCCACACCTCCTGCTTCAGATCTTGGAGACAAATACAGTGTGTTCAGAGAGCTGGAGCAGCCGTCTGACAGAAAGCCAGTTGgGGAAGGTTTTGCAGATTTCAAGTCCGTTGGTGCCGATGACGGCTTCACCGACTTTAAAACGGCCAACAGCACTTCTCCACTAGACCCTCCAGACCAGGCCAAGACATTCCAACCCACTTCTTTTCCAATTCCTTTCGGCccctctcattctctttcacaATCTCAGACCCATCCAGCATCTCTGGCACAGCCTAAAAACCCTCTAAACATGTCAGACCTGGACCTCTTTTCCTCCATAGTTCCTCCTTCCACTGTTGACTCTAAAGCCACCTCTTTTTCCaattcctcctcttcttcctctgcgGTGCCCTCACTGCTCCTTCCTTCCACAGGCCCCAAACCAGACGACTTTGGTGACTTTGCACTGTTtggctcctcctcttcctcatcttctGCCTCTGAGGCAGCTGCCTCAGCTCAGAGAGGATCCGGGGGAGGAGGAGCAGTGGTACAGGATGACTTTGCCGACTTCCTGTCATTTGGTAACCCTGGGAAGCAGCCAAATGAGAGCAGCAAGGAGAGTGATGACTTTGCTGACTTTCAGTCATCCAAATTCCAAGAGAAGAGCTTGGTAGACAAGATGGCTGCCTTCAAACAGGCCAAAGAGGACTCTGCTTCGGTTAAGTCATTGGACCTGCCATCTATTGGAGGCAGCAGCGTGGGAAAAGATGACTCGGAGGACGCACTCTCTGTGCAGCTGGACATGAAGTTATCAGATGTGGCTGGAGAGCTAAAGCATGGTGCATCTGACAGTTCACTGGACCTGCCAGGCCTGAGCTCCCATCAGCCCCCTGCCGCAGAGGTTGACGATCTCAAGTTTGATCCTTTCGGGAACTCTGGCATCAGCGGCCTGACCAGCTGCGATTGGTCCGACAAAGACGAAGCCCCGTCTGGTCAGGGCACGAAAGCCCAGGGAGTTCCTGTGTCTGGACTGCCCTCCTCATCCATGCTTCACAAGAAGGAGACGTCATTTGGAAGCTCagagaacatcacacacaccactcttgCAAAAGTCACCACCTTCCCCATTGAAGATGCAGGGTTTGCTGACTTTGCAGATTTCAGCTCTGCCCAGCATGCACatagagaggaagaggatgatgatTTTGGTGACTTCGCCAGCACTGTTTCAGAAAAATCAGATGCAGCTGATACAGGTCTTGAGGCCACTCATCCTGAGGCGCCAGACGACTTTGGTGCTTTCCAGGCTGACAAGCCTAAGTTTGGCAAATCTGACTTCCTCAAGGCTAGTGCTCAGCCGAAAGCAAAATCCAGTGAGGAGATGATCAAGAATGAGCTCGCCACATTTGATTTGTCTGTGCAAGGGTCCCATAAGCGCAGCCACAGTCTAGGGGAGAAGGAGATCTGCTCCACACCTTCTGCTCCTGAGCAGCAGTTCCGCGATCGCTCCAACACCTTGAGTGAGAAACCGGCGCTGCCGGTCATCCGGGACAAGTACAAAGACTTAACAGGAGAGGTGGAGGAGAGTGAGCGCTATGCGTATGAATGGCAGAGGTGCTTGGAGAGTGCTCTTCAGGTGATCTCCACAGCCAACAACACCCTCAATGGTATCAGCAGTTACGTGTGTACTGAGGTCATCCAGTCAGCGCAAGGCATGGAGTACCTACTAGgcgtGGTGGAGGTGTATCGTGTGGCCAGGCGAGTGGAGCTGGGCATCAAGGCCACGGCCGTGTGCTCAGAGAAACTGCAGGAGCTGCTGAAAGACATCAGCCGTGTTTGGAACAACCTCATGGGCTTCATGTCTCTGGCCAACCTCTCAccTGATGAGAGCTCTCTGGACTTCTCCTCCTGTATCCTGAGGCATGGCATCAAGAATGCAAAGGAGCTGgcctgtggagtgtgtctgctCAATGTGGATTCGCGCAGCAAGaagaaggaggagaacaCATTTGGACGTctgtttaaaaaaGCACTGACAAAAGACCCAGGCACAAAGTCAATGGCTTTTAACTCCGAGACAGATAACTTCAAACTGACGTACGGTGGGCACCAGTACCATGCCAGCTGCGCTAATTTCTGGATTAACTGTGTAGAGCCCAAGCCTCCTGGCCTCATTCTCCCTGACCTGCTGTGATTTCTCTGTTTCACCTCTGCTGCTGTGGAACAACTGACCTGGTTTTGAATGTTTGCTTCTTCTTAatttattgttctttttccCTTCCattgcttcaaaaaaaaaacttttgcttCTTCAACTTGGCCTGTTCTGGTACTCagtgttttgtgtatgtttgctgatgtaaagaaacaagaaaatcAATAATTTATTGATATGTATCTTTAACTTTCTGTCTTTGCCTTTTTTACTGTATCTGTTTGAAGGagagtagagaaaaaaaaactgtcagacCTTTAACTACTGTATGAGATGGACCTGACAACCATCCATAATAAAGAAAGCTGTGATCGTCAGATGAACAGAAATGTAACATAATCTTTAGTTAATTGCATAATGTGAAACAACCATGACTTACACTGTAGTATTTATATTGGACACTTGTTCAATAGATCATGACTATATTAAAGTTACGTATACATCATGCATCCTTTAGATATTTATATAGAAGTATAGAACGATATTTTCCTCTTGCTCATGCTCATCAGAGCTGTGCTGCCATTTAGCTGGAATTTGATCATGTTAATGGCTGGAAATGGAGGGTGTGGGAttgtctgtaatttttttttttttttttgggatctTTCCTAAAGAATCACAAGCAGACAAGGCCTTCTACAGTGTTGAAACAGTACAGCatgtttgatgttttttctcttttgtatcTTGAAGAATGATGAAATGATACTTTAAAAGGTTGTGGTCTTAAAAATGGCTTGTTCTTTCTTCACCTTAGACAAAATTCAgcttatttacataaaatacttTGGGTGTTTTGAGACAGTGGTGATGTCTATTACAATGTCTATTAAAATGCTGTGTATAATTGCTA

Function

symbol description
synrg Predicted to be part of clathrin coat of trans-Golgi network vesicle. Orthologous to human SYNRG (synergin gamma).

NR:

description
PREDICTED: synergin gamma isoform X2

GO: NA

KEGG:

id description
K25219 SYNRG; synergin gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310538.1 True 4882 mRNA 0.50 25 5939052 5975719

Neighbor

gene id symbol gene type direction distance location
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding downstream 142077 5787013 ~ 5796975 (-)
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding downstream 166532 5768627 ~ 5772520 (-)
ywhag2 ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655 coding downstream 195631 5732735 ~ 5743421 (-)
LOC113532847 LOC108277604 coding downstream 316581 5621506 ~ 5622471 (-)
diabloa LOC108278350 coding downstream 330037 5606704 ~ 5609015 (-)
hnf1ba hnf1b coding upstream 13699 5989418 ~ 6003349 (-)
srsf1a srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230 coding upstream 49744 6025463 ~ 6028603 (-)
aldoca aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247 coding upstream 53527 6029246 ~ 6033511 (-)
rskra LOC108277445 coding upstream 59354 6035073 ~ 6047606 (-)
LOC113532842 kiaa0100,LOC107661106,LOC107727920 coding upstream 73734 6049453 ~ 6080648 (-)
G221068 NA non-coding downstream 68425 5870401 ~ 5870627 (-)
G221026 NA non-coding downstream 143599 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 435110 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 450044 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 484129 5454596 ~ 5454923 (-)
G221214 NA non-coding upstream 116194 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 227345 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 350372 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 441163 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 538109 6513828 ~ 6514965 (-)
LOC113532612 LOC108277970 other downstream 135079 5797928 ~ 5803973 (-)
G220990 NA other downstream 228161 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 339677 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 967533 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 2122217 3740282 ~ 3816835 (-)
dynll2a dynll2a,LOC107554284 other upstream 45426 6021145 ~ 6024353 (-)
LOC113532805 NA other upstream 643453 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1416696 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2429110 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2965299 8941018 ~ 8946899 (-)

Expression


Co-expression Network