mrpl28 (mrpl28,LOC107659942,LOC107554268)


Basic Information

Item Value
gene id mrpl28
gene name mrpl28,LOC107659942,LOC107554268
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6527472 ~ 6532884 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310616.1
GTTCGTCCTACGTCACCGGAAGCGGACGCGTGTGCCCTTGATAGACATGTGTGTGCTCCCAGCACCTGGGGCTGCACAGAGAACAGGTCTGAAAAGCTAACATAAACTATCAGATATTCACCTTTGTCTGCTTTTCCTCAGCAAGATGCCGTTACACAAATACCCCCCGCACCTGTGGGAAGCCCTGAAGTTAAAGAAAGGGATCTACGCCCGTCTGCCGCAGCACTACCTGAAATCCCTGCAGGACACGTCACCCCCAACTCCGGTGCACTGGAAACCTCTGGGAGTGAAATACAGAGCAAACCCGAAAACAGGCCACAGAGAGCGGGTTCAAGATGTACCCATTCCCGTTTATTACCCACCGGAGTCACGAGACGGCCTGTGGGGTGGAGAGGGCTGGATACGTGGCTACAGATACGCCAATAACGATAAGCTCTCTGCAAGAGTGAAGAAGACATGGAAGCCTCAGCTCTTCAAGAGGGAGCTGTACAGTGAAATCCTTGACCAAAAGTTCAACATCACGGTCACAGCTCGCACGCTGGATCTTATCGATGCCGCTTATGGCTTTGACTTGTACATTCTAAAGACACCAAAGCAGGACTTAAACTCCAAGTTTGGGATGGACCTGAAACGCGCCATGCTCCTGCGGTTAGCACGCAAAGACACTGAGCTCTGCCCAGACGATCCAGCTCGAAGGGAGAAGATCTACAACAAATACAAGCAGTTTGAGATTCCTGCTGAGGAGGCGGAGTGGGTCGGCCTGAGTATAGAGGAAGCAGTCGAGAAACAGAGACTCCTCGAGCACAAGGATCCTGAGCCACTTTACAAGAGCTGTGTGGAGAACCTGGTGAAGGAACTGGCCATGCAGAAACTCACTGAACCCCAGCTTATGGAAAAGAAAGACTGATGGCTGCATCAGTGAtatgaacagaaataaaatgtatttattggggttttgttttctctgcttACTTTTGTATTGATGCCATTTAAGATATGCCAATATCCTGTAAATATCTAACTTCCaatcaaacaataaattaatcatCTGA
>XM_034310617.1
CTACGTCACCGGAAGCGGACGCGTGTGCCCTTGATAGACATGTGTGTGCTCCCAGCACCTGGGGCTGCACAGAGAACAGGTCTGAAAAGCTAACATAAACTATCAGATATTCACCTTTGTCTGCTTTTCCTCAGATGCCGTTACACAAATACCCCCCGCACCTGTGGGAAGCCCTGAAGTTAAAGAAAGGGATCTACGCCCGTCTGCCGCAGCACTACCTGAAATCCCTGCAGGACACGTCACCCCCAACTCCGGTGCACTGGAAACCTCTGGGAGTGAAATACAGAGCAAACCCGAAAACAGGCCACAGAGAGCGGGTTCAAGATGTACCCATTCCCGTTTATTACCCACCGGAGTCACGAGACGGCCTGTGGGGTGGAGAGGGCTGGATACGTGGCTACAGATACGCCAATAACGATAAGCTCTCTGCAAGAGTGAAGAAGACATGGAAGCCTCAGCTCTTCAAGAGGGAGCTGTACAGTGAAATCCTTGACCAAAAGTTCAACATCACGGTCACAGCTCGCACGCTGGATCTTATCGATGCCGCTTATGGCTTTGACTTGTACATTCTAAAGACACCAAAGCAGGACTTAAACTCCAAGTTTGGGATGGACCTGAAACGCGCCATGCTCCTGCGGTTAGCACGCAAAGACACTGAGCTCTGCCCAGACGATCCAGCTCGAAGGGAGAAGATCTACAACAAATACAAGCAGTTTGAGATTCCTGCTGAGGAGGCGGAGTGGGTCGGCCTGAGTATAGAGGAAGCAGTCGAGAAACAGAGACTCCTCGAGCACAAGGATCCTGAGCCACTTTACAAGAGCTGTGTGGAGAACCTGGTGAAGGAACTGGCCATGCAGAAACTCACTGAACCCCAGCTTATGGAAAAGAAAGACTGATGGCTGCATCAGTGAtatgaacagaaataaaatgtatttattggggttttgttttctctgcttACTTTTGTATTGATGCCATTTAAGATATGCCAATATCCTGTAAATATCTAACTTCCaatcaaacaataaattaatcatCTGA
>XM_034310618.1
GAAGAGCACTTTTCTCACAACCAATCACAATGTCTTGTTCGTCCTACGTCACCGGAAGCGGACGCGTGTGCCCTTGATAGACATGTGTGTGCTCCCAGCACCTGGGGCTGCACAGAGAACAGCAAGATGCCGTTACACAAATACCCCCCGCACCTGTGGGAAGCCCTGAAGTTAAAGAAAGGGATCTACGCCCGTCTGCCGCAGCACTACCTGAAATCCCTGCAGGACACGTCACCCCCAACTCCGGTGCACTGGAAACCTCTGGGAGTGAAATACAGAGCAAACCCGAAAACAGGCCACAGAGAGCGGGTTCAAGATGTACCCATTCCCGTTTATTACCCACCGGAGTCACGAGACGGCCTGTGGGGTGGAGAGGGCTGGATACGTGGCTACAGATACGCCAATAACGATAAGCTCTCTGCAAGAGTGAAGAAGACATGGAAGCCTCAGCTCTTCAAGAGGGAGCTGTACAGTGAAATCCTTGACCAAAAGTTCAACATCACGGTCACAGCTCGCACGCTGGATCTTATCGATGCCGCTTATGGCTTTGACTTGTACATTCTAAAGACACCAAAGCAGGACTTAAACTCCAAGTTTGGGATGGACCTGAAACGCGCCATGCTCCTGCGGTTAGCACGCAAAGACACTGAGCTCTGCCCAGACGATCCAGCTCGAAGGGAGAAGATCTACAACAAATACAAGCAGTTTGAGATTCCTGCTGAGGAGGCGGAGTGGGTCGGCCTGAGTATAGAGGAAGCAGTCGAGAAACAGAGACTCCTCGAGCACAAGGATCCTGAGCCACTTTACAAGAGCTGTGTGGAGAACCTGGTGAAGGAACTGGCCATGCAGAAACTCACTGAACCCCAGCTTATGGAAAAGAAAGACTGATGGCTGCATCAGTGAtatgaacagaaataaaatgtatttattggggttttgttttctctgcttACTTTTGTATTGATGCCATTTAAGATATGCCAATATCCTGTAAATATCTAACTTCCaatcaaacaataaattaatcatCTGA
>XM_034310619.1
ACCTGGGGCTGCACAGAGAACAGATGCCGTTACACAAATACCCCCCGCACCTGTGGGAAGCCCTGAAGTTAAAGAAAGGGATCTACGCCCGTCTGCCGCAGCACTACCTGAAATCCCTGCAGGACACGTCACCCCCAACTCCGGTGCACTGGAAACCTCTGGGAGTGAAATACAGAGCAAACCCGAAAACAGGCCACAGAGAGCGGGTTCAAGATGTACCCATTCCCGTTTATTACCCACCGGAGTCACGAGACGGCCTGTGGGGTGGAGAGGGCTGGATACGTGGCTACAGATACGCCAATAACGATAAGCTCTCTGCAAGAGTGAAGAAGACATGGAAGCCTCAGCTCTTCAAGAGGGAGCTGTACAGTGAAATCCTTGACCAAAAGTTCAACATCACGGTCACAGCTCGCACGCTGGATCTTATCGATGCCGCTTATGGCTTTGACTTGTACATTCTAAAGACACCAAAGCAGGACTTAAACTCCAAGTTTGGGATGGACCTGAAACGCGCCATGCTCCTGCGGTTAGCACGCAAAGACACTGAGCTCTGCCCAGACGATCCAGCTCGAAGGGAGAAGATCTACAACAAATACAAGCAGTTTGAGATTCCTGCTGAGGAGGCGGAGTGGGTCGGCCTGAGTATAGAGGAAGCAGTCGAGAAACAGAGACTCCTCGAGCACAAGGATCCTGAGCCACTTTACAAGAGCTGTGTGGAGAACCTGGTGAAGGAACTGGCCATGCAGAAACTCACTGAACCCCAGCTTATGGAAAAGAAAGACTGATGGCTGCATCAGTGAtatgaacagaaataaaatgtatttattggggttttgttttctctgcttACTTTTGTATTGATGCCATTTAAGATATGCCAATATCCTGTAAATATCTAACTTCCaatcaaacaataaattaatcatCTGA

Function

symbol description
mrpl28 Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in lens; myotome; and solid lens vesicle. Orthologous to human MRPL28 (mitochondrial ribosomal protein L28).

NR:

description
PREDICTED: 39S ribosomal protein L28, mitochondrial

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02902 RP-L28, MRPL28, rpmB; large subunit ribosomal protein L28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310616.1 True 1052 mRNA 0.49 6 6527472 6532848
XM_034310617.1 False 1041 mRNA 0.49 6 6527472 6532841
XM_034310618.1 False 1033 mRNA 0.49 6 6527472 6532884
XM_034310619.1 False 930 mRNA 0.49 6 6527472 6532785

Neighbor

gene id symbol gene type direction distance location
mos mos coding downstream 13739 6511236 ~ 6513733 (-)
hip1 hip1,LOC107714882,LOC107659933,LOC107672373 coding downstream 38887 6447125 ~ 6488585 (-)
zgc:103681 LOC108277991,LOC108443709,LOC103035104 coding downstream 133165 6386179 ~ 6394307 (-)
tyw1 LOC108278267,LOC108443711,LOC107716137 coding downstream 144633 6305358 ~ 6382839 (-)
caln1 caln1,LOC108277467,LOC107582596,LOC107554278,LOC107659935,LOC108443712,LOC107672359,LOC103034584 coding downstream 228522 6233248 ~ 6298950 (-)
cul5a cul5,LOC107554266,LOC107714978,LOC107582587,LOC107701426 coding upstream 3164 6536048 ~ 6554451 (-)
itgae.2 NA coding upstream 25648 6558532 ~ 6579961 (-)
LOC113532622 NA coding upstream 51079 6583963 ~ 6605064 (-)
tubd1 tubd1,LOC107581164 coding upstream 216032 6748916 ~ 6756266 (-)
LOC113532877 LOC108277444 coding upstream 298350 6831234 ~ 6840971 (-)
G221448 dnhd1 non-coding downstream 12507 6513828 ~ 6514965 (-)
G221461 NA non-coding downstream 109847 6416882 ~ 6417625 (-)
G221450 NA non-coding downstream 110664 6326091 ~ 6416808 (-)
G221245 NA non-coding downstream 322542 6203064 ~ 6204930 (-)
G221214 NA non-coding downstream 435038 6091913 ~ 6092434 (-)
G221618 NA non-coding upstream 154705 6687589 ~ 6688311 (-)
G221638 NA non-coding upstream 226526 6759410 ~ 6759618 (-)
G221633 NA non-coding upstream 227772 6760656 ~ 6761787 (-)
G221659 NA non-coding upstream 273271 6806155 ~ 6806367 (-)
G221681 NA non-coding upstream 334900 6867784 ~ 6870274 (-)
dynll2a dynll2a,LOC107554284 other downstream 503119 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 723499 5797928 ~ 5803973 (-)
G220990 NA other downstream 816581 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 928097 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1555953 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 86288 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 859531 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1871945 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2408134 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3144375 9677259 ~ 9713059 (-)

Expression


Co-expression Network