paf1 (paf1,LOC102790690)


Basic Information

Item Value
gene id paf1
gene name paf1,LOC102790690
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 2824607 ~ 2832013 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310700.1
TCCGGAATACGGGTGGGAAGAAATATCACGCCGGCTGCTTCCGCCGAACTCGAGCCTCATCCCAAATGACTTCCTCTAGTATATGTAGGGCACTAGATAGGGCGCCAGAGGCGCTTATTGTACctactatgtagtgcacttctTAAGGGAGGAGGAAAGAATTTAGGATTTGAACTTTGAGACGCGAGAACATACACCACGGAGAATAAACATTGGCCTTATTGGAGTTTATAGCGATAAAGTTTAAAGattgattagattttgaaattaattttagGGGAAAAATCGGTTAAACCTCGCCGCTTTTTCGTCCCTAAAATGGCGCCAACGATTCAAACGCAAGCGCAGCGCGAGGACGGGCATCGGAGCTCGTCACACAGAACCGTCCCTGAGAGgtcCGGTGTTGTGTGCCGGGTGAAATACTGTAACAGTCTCCCTGACATCCCGTTCGACCCCAAGTTTATCACGTATCCCTTCGACCAACACAGgtttgTGCAGTATAAAGCCACCTCACTcgaaaaacaacacaaacacgaCTTGCTCACAGAACCGGACCTGGGAGTGACAATCGACCTCATCAACCCTGATACCTACCGCATTGACCCTAACATTGTGTTAGATCCTGCGGATGAGAAGCTTCTAGAAGAGGAGATCCAGGCCCCCACTAGCTCcaagagatcccAGCAGCATGCTAAGGTGGTTCCCTGGATGAGGAAGACGGAGTACATCTCCACAGAGTTCAACAGATATGGTGTGTCCAACGACAAAGTGGAGGTCAAgatcgGTGTGTCGGTGAAGCAGCAGTTCACAGAAGAGGAGATCTACAAGGACAGAGACAGTCAGATCGCTGCCATCGAAAAAACCTTCGAGGACGCCCAGAAAAACATTACGCAGCACTACAGCAAACCAAGAGTTACACCTGTGGAGGTGTTGCCCGTCTTCCCTGACTttaagATGTGGATAAACCCGTGTGCGCAGGTCATCTTCGACTCCGACCCCGCTCCTAAAGATGTCTCCGGCTCTGCGGCTGTAGATATGATGTCACAGGCTatgatcagAGGAATGATGGACGAGGAAGGGAACCAGTTTGTGGCGTACTTCCTGCCCAACGAGGATACGCTGCGCAAGCGGAAAAGAGACGTGGAGGAGGAAGTGGACTACATGCCCGAGGAgctatACGACTATAAGATAGCGAGAGAGTACAACTGGAACGTGAAGAACAAAGCCAGCAAAGGCTACGAGGAGAACTACTTCTTCATCTTCCGAGACGGAGACGGCGTTTACTACAACGAGCTCGAGACCAGggTGCGCTTGAGTAAGAGGCGCGCGAAGGCCGGTGCTCAGTCCACCACCAACGCTGTGCTGGTCTGCAAACACAGAGATATGAACGAGAAAGAGCTGGAAGCACagGAGGCTCGCAGAGCTCAGCTGGAGAACCACGAGccagaggatgaggaggaagacatggacatggacaaagacacacaggactctgGCGACGAGAAGGAGAAAGGCAGCGAGAGCGAGAACTCTGACAGCGGCTCCGACCGGGACGAGGAGGACGATCGGCGCGGCGACAAcgatgaagaggaggatgaagaggaggaagaagaggagaggaagggGAGCGGCAGTGAGAGCGGAGAGGACCGGCAGGCACGTGACGAGGAGGAGATCTTCGGCAGCGACGACGACAGCGAGGAAGACGACGAGGGCGGCGCgcggaggaggagaaggagtgGGAGCGAGGACGAGGACGcagaggaagagggaggaaGGGCGAGCGGCAGTGCCTCACCCGCCCACAGCAGCAGCGGCCAATCAGAGGGAGGGGGAGGGCAAAGCGGCAGCGAGAGGGGGTCGGACTCCAGCGATGGCAGTGACAGCGAATGAGACGACAGCGGGAGGGAAAAACTACAACCACCATTATGACTGGAGCTCGCTCGCACTCTACTGCTCGCACTCTTCTTCTCACActcttcttctctcactctACTGCTCTCATACTCTTCTTCTCACACTCTACCGCTCGCACTCTTCTTCTCACACTCTACTGCTCACACTCTACTTCTCACACTCTTCTTCTCACACTCTCCTGCTCGCACTCTACCGCTCATACTCTTCTTCTCACActcttcttctctcactctACTTCTCTCACTCTTCTTCTCACACTCTACCGCTCGCACTCTACTGCTCGCACTCTTCTTCTCACACTCTTCTTCTCACACTCTCCTGCTCGCACTCTTCTTCTCACACTCTACCGCTCATACTCTTCTTCTCACACTCTACTGTTCTTATTCTTCTGTTCTTACTCTACCACCTGCACTCTACCGCTCTTACTGTTCATCTCGTGTACTCTACCACTCACACTCTTCCGTTTATACTCTACTGTATTTACTCTACCACTCATACTCTACCACTCACACTCTTCTGTTCTTACTGTTCAGTTGCTCTACCTCTCTTACTCTGCAGTTTTTACTCTGGGTCTCATACTCTATTGCTCACATTCTACCGCACATACCCTACTGCTCacactctgctttttttttactctgctGCTCATACTGTACCGCTCATACTCTTCCGTTCTTACTCTACTGCACAGTCCGCTGCTCATACTCTACTGTTCATTATAGGAAAGAGatgaacaaaacaacaaattgtttctttcattttgccttgttctttcttcttttctttatgGTGACATGTTTCCTGCTCCAACACTTACTGTCCTTACTACACTGTCTTGTCAGAATAATTCCTAATCAATTCTAACAAAACCTcaacagtagtagtagtttatTCTCAAGTGCTGTTCTTTGTGGCAGAGAGACCGTGCATATTACCCATAATCCATTGTGAGCGCGTGTCTGGTGGCGAGTCGGTTATATATACCCTGTGCTAAATGATGCGTTGTTTCACACTGTCTCACTGGAATTATCTCTATCCAGTAGTCGCAGTTGGGATAATTTCTTAAAGGGTAAATAAGGTGTGTTGGAGCAGGAAAAATGCGAATCGCTAAATCCGCTTGGATTCAGCATTTACGCTCAGTATGACCTTCTCAACC

Function

symbol description
paf1 Predicted to enable RNA polymerase II complex binding activity and chromatin binding activity. Involved in heart development. Located in nucleus. Part of Cdc73/Paf1 complex. Orthologous to human PAF1 (PAF1 homolog, Paf1/RNA polymerase II complex component).

NR:

description
PREDICTED: RNA polymerase II-associated factor 1 homolog

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0016593 Cdc73/Paf1 complex cellular_component
GO:0000993 RNA polymerase II complex binding molecular_function

KEGG:

id description
K15174 PAF1; RNA polymerase II-associated factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310700.1 True 3073 mRNA 0.50 14 2824607 2832013

Neighbor

gene id symbol gene type direction distance location
LOC113544523 samd4b coding downstream 12427 2799782 ~ 2812180 (-)
LOC113544504 NA coding downstream 30089 2787772 ~ 2794518 (-)
psma6l psa6,LOC100701743,LOC102789735,LOC103033229,LOC105026880,LOC101155046,LOC106580837 coding downstream 46404 2772442 ~ 2778203 (-)
LOC113544616 LOC108277853,LOC108443018 coding downstream 83460 2698394 ~ 2741147 (-)
zmp:0000000529 LOC108277854,LOC107663551,LOC107572208,LOC107679443,LOC107557657,LOC108443019 coding downstream 127083 2686547 ~ 2697524 (-)
sidt2 sidt2 coding upstream 31375 2863388 ~ 2881293 (-)
LOC113544469 NA coding upstream 114740 2946753 ~ 2953984 (-)
lsamp lsamp,LOC106612642,LOC106580806 coding upstream 201014 3033027 ~ 3690495 (-)
lrfn1 lrfn1,LOC108277437,LOC108440319,LOC107733400 coding upstream 1088775 3920788 ~ 4072868 (-)
LOC117599095 NA coding upstream 1427150 4259163 ~ 4269047 (-)
G219609 NA non-coding downstream 25656 2798193 ~ 2798951 (-)
G219593 NA non-coding downstream 138677 2685089 ~ 2685930 (-)
G219576 NA non-coding downstream 212446 2611394 ~ 2612161 (-)
G218917 NA non-coding downstream 405116 2336752 ~ 2419491 (-)
G218972 NA non-coding downstream 543828 2280253 ~ 2280779 (-)
LOC113544648 NA non-coding upstream 687 2832700 ~ 2839242 (-)
G219632 NA non-coding upstream 80667 2912680 ~ 2936069 (-)
G219678 NA non-coding upstream 138080 2970093 ~ 2991659 (-)
G219697 NA non-coding upstream 183903 3015916 ~ 3031001 (-)
LOC117599091 NA non-coding upstream 516350 3348363 ~ 3520487 (-)
gal3st2 LOC108261785,LOC108277996 other downstream 194706 2612857 ~ 2629901 (-)
scaf4b LOC108411133 other downstream 503692 2281401 ~ 2320915 (-)
trnag-ucc_18 NA other downstream 1327196 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 1327501 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 1669907 1154410 ~ 1154700 (-)
G219642 NA other upstream 55894 2887907 ~ 2963350 (-)
G219651 NA other upstream 75313 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 895364 3727377 ~ 3807114 (-)
LOC113544484 NA other upstream 908269 3740282 ~ 3816835 (-)
LOC113544632 arap1 other upstream 2065937 4897950 ~ 4971519 (-)

Expression


Co-expression Network