LOC113544523 (samd4b)


Basic Information

Item Value
gene id LOC113544523
gene name samd4b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 2799782 ~ 2812180 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310743.1
tctctcacacacacacacacacacacacacacacttgtttttgtgaaaattcAGGACATCTGAAATAAACCTACAAAATGGGGACACACCTCTGTGAGAGGTCTACAGATGAGATGAAAAcagttttgcattaaaaaaatgcacatattaAACTCATCAAGAGGCTTTTTTAAGGGGTCTGAAATTTCACAGCATGGTTTGGACATTTTCAGGTTCAGGTCATATACCAcgacatgtaaacacacactcacacacacacacacacacacacacactcttcagggGAGCGACTCTCCTCCTCCGCGATGCCGGGATTCGGAGCAGTGAATAGCGgcgctttaacacacactctcacacacactcacacacactgaggatggaaacagtgtgtgagtaaatcagagagcaacacacacacacacacactcacacacacagagcacggAGGAGATTTAAACCCCTCTGAGATCTGGAGAAGAGAGAAACAGCCTGGATGCTAACGGCGAGGCCGCGGATGAAGAGGCTAACACATAGCTGCTAGCGTAATTAGCCTAGCCTAGCCTAGCCTAGCTTTCTCCTGGAGACGCTGTTGGATTTCCCCAAACCGCTTCTTGCTGCCTCTCACTGTGGAGTTAAAAACGTCTCGTAGAAAATATTGTGAAGAATCATTCCAGGATTCCATCTCTCACTTTCCCTGTGACTGCTGACTGCCGACCTCTCACTGCCCCTTCCCTGCGCCACTGGCCCTTCGTTGGGCCAGAGCCATGTGAAGCTTTTCTTATGCAGCTCCTGAGTGGACTGTAAGACTATTGCAGTAACACCCCCAACCTCTGGGGGGGCATCTTTAAGATCGTCCCCTTTCCCAGTCCTACACTAAAGGTTACAGCCCTTTTCCTTGAACCCTCACCTCAAGAGGACTCCGTTAGGGTTCGCCATGATGTTCCGGGACCAGGTGGGGATTTTGACAGACTGGTTTAAGGGCTGGAATGAATGCGAACAGACGGTGGCGCTGTTGTCGCTGCTCAAGAGGGTTTCGAGGACCCAAGCACGATTCCTCCACATCTGCCTGGAGCACTGGCTGGCCGACTGCACTGAGATACACTTACTGGAGGCTGAGGCCAACAATGCAGCCATAGTGAGCCAGTGGCAGCAGGAGCCCAAAGAGAAGGCCGTGTCACTGCTGCTCTCACATCTCCCCCTGCTGCAGCCACGTAACAGCGAGGCCAAGTGCGAGTACATGAAGCTGCTCCAGCAGGTGCTGAGCCACACCATCGAGAGCAGCCTGTTTGTGGAGGAGAGCCGCCAACTGCTCTCCTACGCCCTCATCCACCCGGCCACAACGCTCGATGATCGCACCACCCTCGCGCTGTGGCTCAACCACCTTGAGGAGCACTTGTCAGCTCGACCGCCACCTGGAccataccaccaccaccatcatgcCCGACAGGGCTCGGACGAATGGACAGGTCCAACCGAGTCCCTGGAGGTGGCACATGCCTGGCACGATAAACCGCCGTCCACATGTAGCTCGCCTGCCGGCCAGAACGGGCACATGGCCTTTCCCGGGGCGGGTGGAGTGCCCTCCCCCATCAACAGCACAGGCCTTTCTGGTCAGGTACAAACAAGCTCAGTGACACGCACGATGTCTCTTGTTCCTGCCAACCAGCCGGGCTGCAGCTCGGATTGGCTGGGCCAGGACGAAGTGGGTGGGCGCCAGGGTGCCACGGGGGCGGAGCATGCACCACTGtctccacagggcagtgtaGCTTCGTCAGGCAGCGAACAAACAGAGGATCAAACCAACACACGGAACACGTTCCAGGAGGACGGCAGCGGCATGAAAGATGTGCCAACGTGGCTAAAGAGTCTCCGTCTGCACAAGTATGCGTCCCTTTTCTCCCAGATGAGTTATGAGGAGATGATGGTCCTTACCGAGCAGCATCTGGAGTCACAGAATGTGACCAAAGGAGCTCGGCACAAGATAGCGCTGAGCATTCAGAAGCTGAGAGAGCGACAGAGCGTCCTCAAGTCTCTCGAAAAGGATATCCTTGAAGGCGGGAACGTCCGGAACGCCCTGCAGGAACTTCAGCAGATCATCATCACGCCCATCAAAGCCTACACCCCGCCCACTTCTGCCCAGAGAGAGGTGGAGCCTGGAGCCACACCCACCGACAAGGCAGCCAATCCTGTGGAAGAGAAAGACGCGGCTGTAGAGGGCTTTCAGAGCCACAATCCTCCACCCTGTGACGGGGAGACTTCGTCCACGCCCATCTCGGAAGGAGACATTCCTGGGCAGTTTACGCGGGTGATGGGGAAAGtgtgtacGCAGCTGCTGGTGTCACGGCCAGATGAGGAGAACATCAGCTGCTACCTGCAGCTCATCGAGAAGTGTTCAACACACGAGGCGTTCACAGAGACGCAGAAGAAGCGCTTGGCGTCTTGGAAGCAGCAGGTGCTGAAGCTGCTCCGCCTTTTCCCACGGAAAGCCATGCTGGACATGCCCGTGTACCGACAGAAAGGgtgggcgTATGGTTCGAACTCTTTGCCCACAGCAGGCTCTGTGGGTGGAGGCGTGTCTCGGCGAGGACAGAGACAGTTCCCCCTGCCCCCTCGTGGAGCTCCGCTTCCCAGCCGCATGagcatcatcacacactctccacGACACACACTCGCCAACCAGCCGGCCCTCAGCACACAGGGCAgacagaaCCTGTGGTTTGGGAATCCTGGAGGGAGTAACAGCATGCCGAGTCAGAGCCGGAGCTCCGTACAGAGAACACACTCCCTCCCTGTACACACATCTCCACAAACCATGCTCCTGTTCCAgcaaccagaatgctCTGTTCCAGGGACTGACCTGGAGATCAACCCCACGCTGGAGTCACTGTGCCTCAGTATGACTGAACACGCCTTAGGAGatgGAATGGACAGAACATcaacaatatgaaaataaaagcaacgggagaaaaaaaaaaaaggaaattttgcGATCTCACCCTTCTCTTCACGCATGTGTGGCCCGGAACGCTCAATCCAcgctaaaaaaaggaaaaaaaaaaaaaccaaacaattcACTACAAAAGAAACAGCAAGAAAACGAACCATGTACATGTGCTCTTGATATTTTTCTACTTTATTATACtaagtttattataaaatggAATACAGATGACTATTATATGAGAGGTGGCGGCGTGTGTGTGGACTGCAAAGTCAGCGTCCTACTCGCATCCCAgaggaaaggaagagaagagaaacatcGCCGGGGTGAACGTTGTGCGTAAATCGAGTGAAAGGTGAAAGGGCACGAGGGCGTGAGCTCGGCTCTGAGGGTTTAAGAGGAGAACGAATGATTTGGTGCTGATTTTAAGGGCTCATGGCCTGTTCTGTTGCTCATCCAGGagttgtaaacacacacatacacacaaacacaaagacacacacacacacatggtttctGAACCACCTGCATGTTTAAGCTGCATTCACAAGGACTTCTTATTGtcactcagaaaaaaacaaaacaaaaaaaa

Function

symbol description
samd4b Enables RNA binding activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within cerebellar neuron development. Located in cytosol.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310743.1 True 3533 mRNA 0.53 13 2799782 2812180

Neighbor

gene id symbol gene type direction distance location
LOC113544504 NA coding downstream 5264 2787772 ~ 2794518 (-)
psma6l psa6,LOC100701743,LOC102789735,LOC103033229,LOC105026880,LOC101155046,LOC106580837 coding downstream 21579 2772442 ~ 2778203 (-)
LOC113544616 LOC108277853,LOC108443018 coding downstream 58635 2698394 ~ 2741147 (-)
zmp:0000000529 LOC108277854,LOC107663551,LOC107572208,LOC107679443,LOC107557657,LOC108443019 coding downstream 102258 2686547 ~ 2697524 (-)
trnaw-cca_13 NA coding downstream 116305 2683406 ~ 2683477 (-)
paf1 paf1,LOC102790690 coding upstream 12427 2824607 ~ 2832013 (-)
sidt2 sidt2 coding upstream 51208 2863388 ~ 2881293 (-)
LOC113544469 NA coding upstream 134573 2946753 ~ 2953984 (-)
lsamp lsamp,LOC106612642,LOC106580806 coding upstream 220847 3033027 ~ 3690495 (-)
lrfn1 lrfn1,LOC108277437,LOC108440319,LOC107733400 coding upstream 1108608 3920788 ~ 4072868 (-)
G219609 NA non-coding downstream 831 2798193 ~ 2798951 (-)
G219593 NA non-coding downstream 113852 2685089 ~ 2685930 (-)
G219576 NA non-coding downstream 187621 2611394 ~ 2612161 (-)
G218917 NA non-coding downstream 380291 2336752 ~ 2419491 (-)
G218972 NA non-coding downstream 519003 2280253 ~ 2280779 (-)
LOC113544648 NA non-coding upstream 20520 2832700 ~ 2839242 (-)
G219632 NA non-coding upstream 100500 2912680 ~ 2936069 (-)
G219678 NA non-coding upstream 157913 2970093 ~ 2991659 (-)
G219697 NA non-coding upstream 203736 3015916 ~ 3031001 (-)
LOC117599091 NA non-coding upstream 536183 3348363 ~ 3520487 (-)
gal3st2 LOC108261785,LOC108277996 other downstream 169881 2612857 ~ 2629901 (-)
scaf4b LOC108411133 other downstream 478867 2281401 ~ 2320915 (-)
trnag-ucc_18 NA other downstream 1302371 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 1302676 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 1645082 1154410 ~ 1154700 (-)
G219642 NA other upstream 75727 2887907 ~ 2963350 (-)
G219651 NA other upstream 95146 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 915197 3727377 ~ 3807114 (-)
LOC113544484 NA other upstream 928102 3740282 ~ 3816835 (-)
LOC113544632 arap1 other upstream 2085770 4897950 ~ 4971519 (-)

Expression


Co-expression Network