LOC113533231 (LOC107568747,LOC107697496)


Basic Information

Item Value
gene id LOC113533231
gene name LOC107568747,LOC107697496
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1117354 ~ 1119675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310853.1
ATGGCCAACCAGCTGTCTGAGGTGCTTCACCTGAAGTACGAAAGAGCCCACCTAGCCTACCTGCTCAGCGTGCAGAACATCAGGGATGCTGAGGCAGGGCTGTATGGACAGATGACCATCACTGGGGCACTGAGGACGGATGACACACCAGCACCGTTTGGGGGTTATGAGGACACTGATGGGTGGCGTGGGGTGTCTGTGACTGCACACTATCTTGTGGAGTGCCTTCTTCAAGAATATCAGCGGCAGGAGGCAGCTCTCACTCAGGTCCTACAAGGCACTTTTGGACAGGTGTTCAGGTCTGATCACACACGCAAAGTTGCTAGAAAAGTGACGCTCGCATCTGGTACAATGTCATCCTATGCTGTGATGAATGAGAACTGGATGATCCTGTCCTGGGTGATGCTGCAGTCTGAGAGTGAGCAGTCATTAGAGTCAATGTACTGTGGGCTGGCCAGTCGCTATAGTGCTGCTGCTATCCCCAAGGCCAAGTACCAGTGGGTGGACAGGGACTGCTGTGCTGCTTTTAGAGTCATGGACCCAGCACCTTATGAGCACCTGCAGTGGGATGCCTGGAGGACCACTGAAGCCATCGTGGCAGAGGTTACCGCAGGGAACCTCAGGAATTTATGTGCCTCTTGTCTGAAGTACAATGAGGACATCATTGTAAAGCTGGACTTGTTTCACTGCATGCGGCGGTTCACCAGGGAGTGTGTGTCAGAACACCATCCTCTGTATAGCTCTTTCTGCCATTTCCTCTCTGCTGCCTTCTCTGTAGTGGATCAGAGTGACCTggagaaactgaaaaatgcaTACAGATTCTGTGGTATTGAGCCTGCTAATCCCACCAAGCAGCATATCAGAGAGCACTGCAGGACAAAAGTTCCACATCCCAGAGAGCTGGTCCAGAGGGTGGAAGAGGTGCTTCAACATTTCCATCTAGCAAAGGATCCCAACAACATCCTCCTTTTTAAACCCTCAATGCTAAAGGTGTGGTGGATTCAGCGTGTACACATCCTTAGGGGCTGCCTGAGTGACCCTGAGGTGGAGGAAGGAATCCTCTACAGACATGGGGGGATGTTACAGCTCAATCATGTAAAGGGTGAAGGAGCTGCTGTGCCCATTTGGATCCCTGTCAGAGGCACCTCACAGCAGGAGGGGTTTCATTTCCACCAAGCTCAGTGGGTAACAGGCAATCGTGTCTCTCCTGAACTGTTCCAGGCACAGGGAATGACTGGGGTGGCGCGCTGGAATTATCAGCGGCTGGTGGACCTGAAGCAGCCGGGGGTCGTCCTACCTGCAGTGTTTGACCCTGTGTTAATGATGGAGTTAAACAGGGCCTCTGTGAGAGTGACAGGGCAGCCCAAATATCCAGCCTTGCACATCTCCAGCAGGGACACAGGGGAGAAGTTTGGCCTACAGTATGTGGAGCCAGGCTGTCGACCAGTGCCTCTTGACTTTGACAAACATAAGTGCAAGAAGTCCACCCTAGGAGATGTGGAGATTGAAGAGGAGTCTTCATCTGGCTTCGAGTCATCAATTCCATCTAAGGAATGGTTAGATGATTCCTCTTCTGCTGAGACCCCTCTTGCTGCAGAGCCAGAAACCACCCCACAGATTGTCTCGTTTCACCGATTTTCCACTCCAAGTCCTGTGACAGTAAAGGAACAAAGGTCTGAGGAATTTCTGTCAGATGCAgAACTGCTCAGGACACCACCACTGCCTATAGCTGCTTCTCCCCGTGCAGCTCGCACTGGACCCATTAAGACAGGTGGTCGAGTCTTTGTCTTGGACCACAACAGATGGACGGACCCAATGAGAAATGCCATCGATGGTCTCCTGGCCAAGCACCATGGGAGCAAGGATCTCCTTAAAAGGGTGGATGCTGATTATGCTGCTATGGTACAGAGTGCCTGCACTGACCCCAACAGCCTTCTGCACTCAACCACGAAACAGCACATAAACAGGTACATAAAATaccttgctaaaaaaaaaacacaaatgcctCTCTCAACACCAGCCCAGAAAAGCTCCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310853.1 True 2037 mRNA 0.52 4 1117354 1119675

Neighbor

gene id symbol gene type direction distance location
mffa mff coding downstream 240409 863690 ~ 876945 (-)
mrpl44 mrpl44 coding downstream 255759 857338 ~ 861595 (-)
agfg1a agfg1,LOC108413522,LOC107683378 coding downstream 263528 823729 ~ 853826 (-)
si:dkey-260j18.2 si:dkey-260j18.2,LOC108278347,LOC108442862,LOC103030600,LOC105903253,LOC107758546,LOC107561384 coding downstream 298692 810898 ~ 818662 (-)
slc5a2 slc5a2,LOC107678242 coding downstream 309428 794925 ~ 807926 (-)
LOC117599093 NA coding upstream 117 1119792 ~ 1121387 (-)
LOC117599094 LOC107697487 coding upstream 1407 1121082 ~ 1122737 (-)
irs1 irs1,LOC107577679 coding upstream 78438 1198113 ~ 1217196 (-)
col4a4 NA coding upstream 115232 1234907 ~ 1290435 (-)
slc8a2b slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 coding upstream 273602 1393277 ~ 1447217 (-)
G218268 NA non-coding downstream 24175 1092791 ~ 1093179 (-)
G218191 fbxo46 non-coding downstream 253909 791773 ~ 863445 (-)
G218208 NA non-coding downstream 269714 847396 ~ 847640 (-)
G218184 NA non-coding downstream 375511 731362 ~ 741843 (-)
LOC117599090 NA non-coding upstream 3754 1123429 ~ 1127973 (-)
G218306 nyap2 non-coding upstream 41038 1160713 ~ 1161109 (-)
G218324 NA non-coding upstream 98556 1218231 ~ 1227815 (-)
G218325 NA non-coding upstream 101478 1221153 ~ 1222614 (-)
G218347 NA non-coding upstream 208463 1328138 ~ 1357336 (-)
mecom LOC108278348,LOC108269179 other downstream 14470 955480 ~ 1102884 (-)
G218214 NA other downstream 238171 878772 ~ 879183 (-)
numbl numbl,LOC107374161 other downstream 370097 712895 ~ 747257 (-)
dpf1 dpf1,LOC107672425,LOC107561370,LOC107749650,LOC107758770 other downstream 432896 635615 ~ 684458 (-)
G218302 nyap2 other upstream 34735 1154410 ~ 1154700 (-)
trnag-ucc_17 NA other upstream 377204 1496879 ~ 1497106 (-)
trnag-ucc_18 NA other upstream 377665 1497340 ~ 1497411 (-)
scaf4b LOC108411133 other upstream 1161726 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1493182 2612857 ~ 2629901 (-)

Expression


Co-expression Network