LOC117599093


Basic Information

Item Value
gene id LOC117599093
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1119792 ~ 1121387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310854.1
AAGAGCTGTGTTCCAGGAAGTAAAATGTACCGCTTGCAGCAATATCTTTTAAAGCAGCAAAGACAGGTGACCACAGCCCCTTCTGCTACACCTTCACCCTCACCATCAACTCCCTCTGCACCTTCCACTTCATGCCTTTCCTCTGATCATCCAGtaatggaggaggatgaggaactGGAGAAGATGATGCTGAGTCTGTCTCCACCCAAATGTCCTACACAGCAGAGGTCACCCACAGCCACTGCGTGTCCAGTCTTCTCTGCAGCAGGAGGTTATTTTCCACATCAGTTTTGGAGGCTTATCCTATTACCCACAGTTTTTTCCTCCATAactgtttttaatacatttgtttattgttttggcAGTGTTCTTGCCTGTTCTAAAAATTGCGTTCTTTTGTTCTACTAACTAATGTTAAAGGTTGAACATACTGGTGATGAGGTTCTGCCACAGCCACCATCAAGACCACATGCGGTCTGCCATCCTCACACACCACCACCTCCTGTGCCTAGCACTTCCTCTCAGTGCAAATCCCCTGCATCACTGCCCCGAGTACCACcaccagctgtgcagtcagtACCCGCAGCACCTCTACCAGCTGCTCAGTCAGTACCTGCACCAGTGccctccacacagacaggagtcCCTGTGTCCAGTGACATGCAAGATATTAGCCGCTGGAACTGCTCCTGCCATCAAAAAATCTGGATGAAAACAGAGATGGAAGCCCTGGGGCTCTGGCCAGGATCACGACCGGTGAGACAGCCTATGAACATGGTTTCCTTGTGGCGTTATCCTCCTCAGCCTGAGCTTGTAGAAACCAACACAGGCCTGCCATCACCAAAATACTTTCAGCTCCATCCCTTCTTTATCTGGAAACCGGAGCACAGTATAATGCAAAGGCTAAGAAACAACTACATCCTGCCTTGTCTCTACAGCTGTCCAAACCCTCAGGTTGTTTCCTCTGGTGTGGGAAGGCCCAGAGTGATTCTTGGTACCAGCGGGCAATATTACATCCTTTCCTCTCGACTGAGCTGTAAAGCATGTAAAAATACTGGTTCGCTGATAAACCCCAGTGGCTAG

Function

GO:

id name namespace
GO:0007632 visual behavior biological_process
GO:0007634 optokinetic behavior biological_process

KEGG:

id description
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310854.1 True 1083 mRNA 0.49 4 1119792 1121387

Neighbor

gene id symbol gene type direction distance location
LOC113533231 LOC107568747,LOC107697496 coding downstream 117 1117354 ~ 1119675 (-)
mffa mff coding downstream 242847 863690 ~ 876945 (-)
mrpl44 mrpl44 coding downstream 258197 857338 ~ 861595 (-)
agfg1a agfg1,LOC108413522,LOC107683378 coding downstream 265966 823729 ~ 853826 (-)
si:dkey-260j18.2 si:dkey-260j18.2,LOC108278347,LOC108442862,LOC103030600,LOC105903253,LOC107758546,LOC107561384 coding downstream 301130 810898 ~ 818662 (-)
irs1 irs1,LOC107577679 coding upstream 76726 1198113 ~ 1217196 (-)
col4a4 NA coding upstream 113520 1234907 ~ 1290435 (-)
slc8a2b slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 coding upstream 271890 1393277 ~ 1447217 (-)
gmnc gmnc coding upstream 348433 1469820 ~ 1474274 (-)
zgc:162872 LOC108277719 coding upstream 384102 1505489 ~ 1514055 (-)
G218268 NA non-coding downstream 26613 1092791 ~ 1093179 (-)
G218191 fbxo46 non-coding downstream 256347 791773 ~ 863445 (-)
G218208 NA non-coding downstream 272152 847396 ~ 847640 (-)
G218188 NA non-coding downstream 379794 734370 ~ 739998 (-)
G218187 NA non-coding downstream 381574 733617 ~ 738218 (-)
LOC117599090 NA non-coding upstream 2042 1123429 ~ 1127973 (-)
G218306 nyap2 non-coding upstream 39326 1160713 ~ 1161109 (-)
G218324 NA non-coding upstream 96844 1218231 ~ 1227815 (-)
G218325 NA non-coding upstream 99766 1221153 ~ 1222614 (-)
G218347 NA non-coding upstream 206751 1328138 ~ 1357336 (-)
mecom LOC108278348,LOC108269179 other downstream 16908 955480 ~ 1102884 (-)
G218214 NA other downstream 240609 878772 ~ 879183 (-)
numbl numbl,LOC107374161 other downstream 372535 712895 ~ 747257 (-)
dpf1 dpf1,LOC107672425,LOC107561370,LOC107749650,LOC107758770 other downstream 435334 635615 ~ 684458 (-)
G218302 nyap2 other upstream 33023 1154410 ~ 1154700 (-)
trnag-ucc_17 NA other upstream 375492 1496879 ~ 1497106 (-)
trnag-ucc_18 NA other upstream 375953 1497340 ~ 1497411 (-)
scaf4b LOC108411133 other upstream 1160014 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1491470 2612857 ~ 2629901 (-)

Expression


Co-expression Network