LOC117599094 (LOC107697487)


Basic Information

Item Value
gene id LOC117599094
gene name LOC107697487
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1121082 ~ 1122737 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310855.1
CAATGGTAGTTCTTATCACTACggatgtaatatatttttggcCACACGTTGATTCCATGGCGCTGTAGCGGAGATGCACCAAAAGCCGGTTTGGCACCCCGCGATaaaaccccaaaaaaataaaggaGAAAGGAAGATTCCATAGCGCTGTTCcgagatttgttttgtttttaaaacatacattttgaaTTGCCTCAGCTGTCTACCATCCAGGCTATCAGCATGAAGcaagctatttttttccctGGGAGAATCAAAGTGTCCTTCAGGAGAGGCCCATCGGGTCATTTACGTCGGGACCCATCTGAAGAGGCGAGAAGGATTAAAGACAATCCTTCTTTGCAAGACAAGTCGACACCTCAAAGAGAAGATGTGGTCAGGAACAATGCCCGTTCCGTTGTATTACAGAGGGGAGGGGATGTTTCAGACAAGCAAGAAGTGTTAGGAGAATACATTCTTCAGTTTGGGAAGTACAAAGGGAAGTCCTTCCGGTGGCTATTGGAGAATGATATTGGCTACTCTTTGTACTTGTCCAGTAAGGTTGAGGAGGAAGAACGGGCTGGACAGTTCAACCCAGAGGGTCCTTGCAAGGATAGCCTCCTTTCCTTTCTTGAATACTCAAGAAGCTTTAAGGAAATTGAGGATCTCCGGCGATACCTTTCAGAGAGGCCAGACCCAGTACCAGTTTTGTCAGAGGATGACAATGTTGTTGGATTTGGGGCACGAGCACAAGACACCTGGAGGAAGATCTGGAATACCAGAGCTGATGGTCTACtgatgcatttgtttcatttcacagtaatggaggaggatgaggaactGGAGAAGATGATGCTGAGTCTGTCTCCACCCAAATGTCCTACACAGCAGAGTAAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310855.1 True 879 mRNA 0.46 3 1121082 1122737

Neighbor

gene id symbol gene type direction distance location
LOC113533231 LOC107568747,LOC107697496 coding downstream 1407 1117354 ~ 1119675 (-)
mffa mff coding downstream 244137 863690 ~ 876945 (-)
mrpl44 mrpl44 coding downstream 259487 857338 ~ 861595 (-)
agfg1a agfg1,LOC108413522,LOC107683378 coding downstream 267256 823729 ~ 853826 (-)
si:dkey-260j18.2 si:dkey-260j18.2,LOC108278347,LOC108442862,LOC103030600,LOC105903253,LOC107758546,LOC107561384 coding downstream 302420 810898 ~ 818662 (-)
irs1 irs1,LOC107577679 coding upstream 75376 1198113 ~ 1217196 (-)
col4a4 NA coding upstream 112170 1234907 ~ 1290435 (-)
slc8a2b slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 coding upstream 270540 1393277 ~ 1447217 (-)
gmnc gmnc coding upstream 347083 1469820 ~ 1474274 (-)
zgc:162872 LOC108277719 coding upstream 382752 1505489 ~ 1514055 (-)
G218268 NA non-coding downstream 27903 1092791 ~ 1093179 (-)
G218191 fbxo46 non-coding downstream 257637 791773 ~ 863445 (-)
G218208 NA non-coding downstream 273442 847396 ~ 847640 (-)
G218188 NA non-coding downstream 381084 734370 ~ 739998 (-)
G218187 NA non-coding downstream 382864 733617 ~ 738218 (-)
LOC117599090 NA non-coding upstream 692 1123429 ~ 1127973 (-)
G218306 nyap2 non-coding upstream 37976 1160713 ~ 1161109 (-)
G218324 NA non-coding upstream 95494 1218231 ~ 1227815 (-)
G218325 NA non-coding upstream 98416 1221153 ~ 1222614 (-)
G218347 NA non-coding upstream 205401 1328138 ~ 1357336 (-)
mecom LOC108278348,LOC108269179 other downstream 18198 955480 ~ 1102884 (-)
G218214 NA other downstream 241899 878772 ~ 879183 (-)
numbl numbl,LOC107374161 other downstream 373825 712895 ~ 747257 (-)
dpf1 dpf1,LOC107672425,LOC107561370,LOC107749650,LOC107758770 other downstream 436624 635615 ~ 684458 (-)
G218302 nyap2 other upstream 31673 1154410 ~ 1154700 (-)
trnag-ucc_17 NA other upstream 374142 1496879 ~ 1497106 (-)
trnag-ucc_18 NA other upstream 374603 1497340 ~ 1497411 (-)
scaf4b LOC108411133 other upstream 1158664 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1490120 2612857 ~ 2629901 (-)

Expression


Co-expression Network