col4a4


Basic Information

Item Value
gene id col4a4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1234907 ~ 1290435 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310856.1
GTTATGGTCGACTCTTTCTAGGCTCATTTCTAGGGGACAGGTCCACGTTTTGGGCGCGTGCTTTCGCCTCTAAATGTGTGTTACATTCAGGGGTGATGTGAAATCGCCGTGGTGCACAGAAGCACAAACCAGGAGTATCACTCATAAGGGTCAGAGGTTGAGATTTGGCTCCACCAGTCACAGGCTGACAGAGACTGAGGCTACATCTCAAACCAGAGCACGCCGTGAGTGGCGGGTGAGATGACACGCCCCCACTGGATTGCCTCGCTCAGCCTCCCACTCTGGTGGCTTTTACTGACACACGGGTACAGACAGGAAGTTCGAGCGGGGGAGAATTCCAAGGACTGTATCCAGCGCAACATCAGCTCGTGCCCGTGTCCTCCAATAAAAGGTTCCCGGGGATCTCCTGGTGCTGTTGGGGAAGAGGGTAGAATGGGGGCTCCAGGTCCACAAGGACCTCAGGGGCAACGTGGACTGAAAGGACGCCGCGGATCTGAAGGACTTCCTGGGGTTGCTGGACCACAGGGAGATACAGGCGCTCCAGGAATACCTGGAAATCATGGACAAGATGGATACAATGGTCTTCCTGGAGCTACTGGCCCTCACGGTCCTCCAGGATTAGATGGCTGTAAAGGACCCAGAGGAGATCCAGGAGTGGATGGCTATCCAGGACCAAATGGTGGAATCGGACTACGAGGTTGTCAAGGACCGAAGGGACTCAAAGGAGAGCCTGCATGCAAATATTTTATGATTCCCGGTCAGCGTGGTTGCGATGGACCTCCTGGTGATCCTGGACCTCAAGGACTTCCTGGACCTTGTGGCCCACAAGGTGCGCCAGGGAAGCCTGGAGACCCGGGATTACCGgGTAGAAATGGTGTTTCAGGCACTCGAGGTCCTCCAGGAGACACAGGAAAAGCGATTCCTGGTCCAAGTGGAGAGGAGGGAGATCCAGGGCCAGCGGGCCCTCCAGGCCCTTTCGAAATACTTGAGGCATTAGAAGAATATTTCCCCAAAGGACACAAGGGGGATAAAGGACCTGAAGGAGTCTGTGGAATGCCTGGAtgtaaaGGAACTATCGGACCTGCGGGGCAAAGAGGAGAGAAAGGCACCGCTGGCTATCTAGGACCTACAGGAGAATGTGGCTCTCCTGGGCATTCTGGCAGACCAGGAATTCAGGGTGAACAAGGAAACCCTGGACTCCCTGGTCAAACTGGCTGCCCTGGACTAAAGGGAATCTTGGGTGATCCTGGTCCACAAGGGCAAACAACATGTTTCTCTTATAAAGCAGGTTACATCGGTGAGCAAGGATGTCCTGGGCCCCTCGGTATCAGAGGAGAGATGGGATTGATGGGCCTGCCGGGCCCTCCTGGTCCACCAGGACCATCTATACCAGGCCCCCCAGGCGGCCCAGGGACAGTGGGTCCTCGAGGTTTTCAAGGTGAAAAAGGAGAGCCAGGAAAGAGAAGCACCGTGCATGTCCCAGGAGAACCTGGGAAACCGGGGCTTCAAGGGCCAAAAGGCATTCAAGGGGCTCCCGGACCCCATGgatccTTCTGCATCCCCGGCCAAAGAGGAGATCCTGGTGCTGAAGGAGATAGAGGACGACCAGGTCCAACAGGCATTCGTGGGAGGAAAGGTGATAATGGGTACTGTGCTTGTGAGGTCAGTAATATTTATGGCCATAAGGGTTTCCCAGGTGAACCTGGGGATCCTGGTGCTCCAGGACTGCATGGGCTTCCCGGTGCACAAGGTGAAATTGGACCTGATGGAGATCCTGGACCACGAGGAAGTTTTGGTTTTCCAGGTTTTCCAGGTAGGATGGGGatgaaaggagaaaaaggagaCCTGTATATGATGAACATCAAGGGTCAAAAGGGACAGTCTGGAACACCAGGGACTGCTGGTTATCCAGGAATCAATGGCATAAGTGGTTATTCTGGGTCTCCTGGGCCTGCAGGTGATTGTGGTCCAGAGgGTGACAGTTTTACAGGTTTTCCTGGTGATAGAGGTTGTCCAGGAAATATGGGCTTCAAAGGTGAAAGAGGTCCCTGTGGACCACAAGGCCCAGGCATTCCTGGGCCAGTAGGTCTTCGAGGAAAAGAAGGTGAGCAGGGACCTCCAGGACAGAGAGGAGTTGTTGGGCGTAAAGGAAACAAAGGTGATATGCAACCCTGTATACCTGGCAGTCCTGGACTCCGTGGACCAAAGGGAGAGTGTGGTGACCAAGGGCGCATAGGAGTGCAGGGCGACCCAGGGCCTCGTGGGGATGATGGAATTAACGGACCaaagggagagaaaggaaaCCTTGGATATCCTGGTCCAAATGGCCCTACAGGGCTATGTGGATCTCAGGGGGATCCTGGAGACGTTGGAACCGACGGCAATAGTTTGAGTGGAGAGCCAGGGATACCTGGCAATCCTGGACCCCCTGGGTTAAAAGGATGCATTGGCGACTCATTGGTAGGAAATCGAGGGCCAGTAGGCCCTTTAGGGTTCGAAGGCTCTTTAGGACCTAAAGGAGTCCCTGGAGCCCCAGGGTCACTTGGTGGACAAGGCTCTCCTGGTGTACCTGGAGCTCGAGGTAGGAAAGGAGAGCCAGGAGGAAATGGTCAGCCTGGGAGAGAGGGGTCTGTTGGCCCATGTCCAGTACAGTGCGATACTGGAGAAATGGGCGACTCGGGACTGCCAGGAGACCAAGGCTGTAGTGGAAATCCAGGTGAACGTGGTGTGAAGGGAAGTGCCGGACCACCTGGCCTTCCAGGAAGGGGGCTGAAAGGTTGTGCTGGGAAACCAGGCCCACCTGGTGCTCGGGGATACTGTGGTCCTCAGGGATGCCCAGGAACAGAAGGAGATCCTGGAGATCCTGGTCTTAAAGGATTGAAAGGTTTTCCTGGACAACCCGGAAGCGACGGCTTCCCTGGTGGCCTAGGTGAGTGTGGACGTCAAGGACCACCTGGCATAAAAGGCGATAAAGGCATCGATGGGAGGCAAGGTTGTCCTGGGGAGAtaggagagaaaggagagaaagGTTCCTATGGATTTCCTGGTATGCCAGGAGAGATTATCGTGAATGCTGTAAAGGGGACGAAGGGGCCACCAGGAGTGCCCGGGCTATGCGGCCTCACTGGTCCCCAAGGTGATAAAGGTGTGAAGGGACAACAAGGTCCAAATGGTTCTCCAGGGTATTGTGGACCTCCAGGTTATGAGAACGGTCCTCGAGGGCCACAAGGTCCCGGTGGAAAGCCAGGTATACCTGGACTCCATGGTTTTCCAGGGTTAAAAGGCTATAGCGGAATTTGCGGAGGACATGGAGATCCAGGTGACCCAGGCTTGAATGGATCTCCAGGAAACCCGGGTTTCCCTGGATTTAATGGGCCGAAAGGTGAAAGAGGAGATTCTATAGGTACACCAGGACCTCCAGGTCTAAGAGGCCCACATGGACAAAATGGCTCCCCAGGTCCTCCAGGGGATCAGGGAGAGTCAGGAGAGACGGGTCCACCTGGTCAGTGTGGATATCCTGGCAAACCTGGTCCTGTTGGAAATCGGGGACCATGTGGACCTCTGGGTGTAATTGGTCCCCCAGGACCCAGAGGAAAATGTGGTGCCGAGGGTCCTTCAGGGCCTCCTGGACCTCCTGGAACTACTGGACCATCAGGCCACTGTGGCCCACCAGGTTGTCCAGGGCCACCAGGACTGCGTGGATTGGATGGATTAGAGGGAGTGAAGGGTGAACCAGGGTCACAGGGACTAGGAGACCCTGGGCCACAGGGTCCTGTCCAGCAAGGGGTCAAAGGCTGTCAGGGCCCGCCTGGATTGCCAGGTGATGCTGGTTGTCCTGGTCCTCCTGGTCCTTATGGCAGGGCCTGTGAGAACCCAAGACAAGGACAGTGTGGTGAAGCAGGCTTTATGGGTAGTGATGGCCCACCAGGACTTAGGGGACCTATGGGACCGGCAGGACTGGCAATACCTGTGCAGGGGGAAGAGGGGGACCCAGGTACACCGGGTCTTCCCGGAGCTAAAGGGCCAAGAGGTGATTGTGGTCCCTCTGGCCAGGTGGGGGTTTCAGGCCCCCAAGGACGGAAAGGTGAGAAAGGAGATCCAGGGCTTCTTGGAAATCCTGGACCTTCTGGCTTACCAGGAACAAACGGCAACCCCGGGTTCAAGGGCCCTAGAGGACTAAACGGAGATAAAGGTTCTGCTGGAGAAGCAGGGGAAATTATTCATATGAAGGGCAGACCGATTCAAGGTCCATATGGGCATCCTGGGCCTCCTGGTGAGCCTGGCTTTCAAGGACTTACAGGAATTCAGGGCAGTAGGGGGCTGAGAGGGGTAAAAGGCTCAGTGGGAGATCAAGGGTTGGATGGTCAACCTGGCTCCCTTGGCTATACTGGACCTCCTGGAGACCCAGGAGAGACGGGTGCCAGAGGTTTACAAGGCAGTCAaggcaAACAAGGACCTCAAGGGGATAAAGGTCCTGCTGGCCCCTCTGAGAGGTTCAACTCTGGCTTCCTATTGGTCATCCACAGCCAAACAGTAGTTGTACCTGTGTGTCCTGAAAATATGTCCAAGCTGTGGGAGGGATATAGCCTACTGTACCTGGAGGGGCAAGAGAAAGCTCACACACAAGACCTAGgtcaGGGTGGTTCCTGTATGCGTATGTTCAGCACTATGCCCTTTTCGCGCTGCAACCTGCATGCCTGCCACTATTCCAACCGCAATGACAAATCCTATTGGCTTTCCACCAATGCTTCAGTATCCACCTCGCCTGTGTCTGGGCTGGAGATCCAGCCACTCATCAgcaggtgtgtggtgtgtgaggcTCCATCAGTGGCCGTTGCCATTCACAGCCAGGACACATTCATACCCCGGTGTCCGCCGAATTGGAGGAGCCTCTGGTTTGGATACTCATTCCTTATGCACACTGGGTCTGGAGATGAAGGAGGCGGCCAGTCTCTCACATCGTCGGGAAGCTGCCTACAGAATTTCTTCACGCATCCATTTGTGGAGTGCCAGGGCCCACAGGGCACATGCCACTACTTCCTCAACCTCTACAACTTTTGGCTCATACGTTTGGATAAGCAGGACATGAGCCCGGATTCGATGATCCTAAAAGGAACGGCCGAGCAGCGTGATCATGTTAGCCGATGCAACGTCTGCTTGAGGGAGTGAGACCATTCCAGGTTTATAACACTACATGCCCTCCTTTGTGTTGCTACAGAGGATGTGAGTTGGGTGGAGTCATAATAACTcatattgaaaaaaagaaagaactgaaCAGTTTGTGATTATTCACACTGAAGAACAACTGTGAACAAGTTTGTATACACTTTTCATCTCTACACCTAATACTTGAGAGTTCAAGCAGTGTTTTATATCTAGTGATTCTGATTGCCTTGTCTCAAATTACTGgctagtttttaaaaaatcaattagTCAATTGTTGTCAGCCCTGTCAGCGCTGGCATTTTGAATTCCACAAAAGTTCAACATCAAAACTCTCTTCACATGACTTTACATCTGTGCAGCCAAACTAAGAGATAgaatgccttgcataagtattcacccccctgtTCTTTAACAACTTTTGTTgaattacaacctggaattgaaatggactcGATGATTTACACAATACTGTATGTCTAACATTTGTTGgtgcaaaatatttatattgtcaCCAAGTAAAcatacttatatacttatatacctATATAAAATACTTGGTAGAATcacctttggctgcaattacagctgcaggGATTATGTCTCAATCAATTTTGCACATCTGGTTCCTGACCATTTTCGCCATTCTTCTCGACAAAACTGCCGAAGCTTTTGTCAGATTGGATGAAGACAGTTAGTGAACAGCATTTCTcaagtcttgccacagattcGTAAAGGGATTGAGGTCTGGGGCATTCTAACACGTTCgggttcttggttttgaaccactccaTTGTAGCTTTGGCAGTACACTTGGGATTATTGTCATGTTAGAAGGTGAACCTCCACTCTAGTCTAAAGTCACTTGCAGATTGGAACAGattttcttctaggattgccttttatttggctccatccatcttgcctttaaccctgaccagtttccaAATTCCTACTGATGAAAAGCATCTCCACTACATACAGTagtgctaccaccaccatgcttcactatgTGGATCATGTTCTCTGGGAGATGAGTGGGTTTCTACCAACCCTAATGCTTTGTACCAAGGCTAAAAATTTCAATTTTGATGTCATAAAACCAGAGAAGCTTTTTCCACATTTGCTGAGGCTCCAGTatgccttttggcaaactcGTATGGCCTTTTCTCTTCTCACAGGGTATAAATACTTACGCAAGGCACCTTAGCCTTTTATAACAAGAATAGAAAACTATCAGATTCTTTATAGATTCAAATTATTGTAAATGCTGGAGGGAAAGCATTGATAAAAGGAGGTGTGCCACTTTTACTATGGGTTCAGTCATTTGGATTCACCACCAGAAAAAACAATGGTGCTAAATGTCATTACGTAGCATTTCCACCTACTGAGCATCAAATGCTCAGTTTCTTCTTTATCATTTATCTTATTTTCTCTTACCTTTTAGCTGTGGCTTCCACAGAATCTTGTAGCCATCTGTCTCTCATGTTATCCCTCTGCATCACCACTTTTGTTTACTCTCCGCTGGACCTCAGTGTGCATGCAAATACTCATATTTCATGGTTGCATTTAATGGCACATTTCAATATTTGCACTTTATTGGTTAATATGTTTAGATACTCAAGTGCTtcatcttttctcctttttttttggaaatctCTCATCTTTTTCCCTGGGAAAGTAATCTAAAAACACCAGCCATGAATGGTTGTTAAAGAATCTTCCCTAAAGTAGattcattttgtgtttctgtttatggTGCTGTTACGAATCATTATCCATCACATATGACTGTGGATATGGGAACTTTTAGACATTATATATTctactgtatgtaaatatgtttcACTGTTGAAAAAACTGattctttatcatttttttatttatttaggaagAGGTATTTTGTATGGAAGCCCTGAACcaaaagttgtttttatttatttatcatctcAAGAACTAGATACTTCACGTGATGCTTATTCCATATGCACTTTCCCGGACAGTAAGTAAGCCAGACATTGCTTTAGCGGAATTCAGTTGACACATACACTAATCTAATCTACAATGTAATGATTGGTAATTcactaaaaatgttttcacgTATGGTACGTCAAGTGAAAAATACTCAAAATTGCCGCTATGACCATTATGGAATTCCAGAAATTTGTTAGGAGTCTAAATAATTTGTCAGAAGCTAGCTGAAATGATGTTTTAGCTTATGTCACTACTTAGCTAGCTGCTAACTTGCTAGCCACTAAGCCAGCCTTTCTAGCTACCGTACCTATCCTTAGTATCTCGTGAACAGTATTCTAGCTGCTTTCTAGCTGCTTTTCAGCAGAACTTTGGCTAGCTCGGGATCCATCCTCAGGTAGAAGACTAAACTAGCAATAGTGAGCAGCTATAAAAGTTCTGGTGTATGATGAAAcgttttttgtatatttacatttatacttaCGTTAcattctcacttacattatatcaGCTGTAAACATATTGCCGTTCCCTcaacagcttctctttttttcctctctctcgacattaataagacaaaaaaaaaatcacagcttgtcgTGGTACCCACAGACTACGGTGAcggaaaagtctttttttacGTGACGCTTTTTCTAATCTGTCCAAAATAAGGAACCTTAGAAGACAGACGCTTTCTGAAAGAAACAGACTTTATCTTACAGACGAAGGTAGTGAGGATAACTCACGTTAAACACGTAAAAAACCACAGATTATCACTAATGTTGGACTCGTAACCACGTGGataccaaacacacacctgtggaCGTTCAGGACGTGGAAATTTCGTGGAAAGCCGTCCCGTTCAGAGTCACAGCAACAGAACGACACTAGCAGAAACACTGTTCAGCCAGCACTAAgagtttatttcttttgtttgcttgtttttttacaAAGTGACCATTTAGCTGTCGTTGCAGTTTCAATAAAAGACACTGAGTTCTGAAATTCA

Function

NR:

description
collagen alpha-4(IV) chain-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310856.1 True 8143 mRNA 0.49 48 1234907 1290435

Neighbor

gene id symbol gene type direction distance location
irs1 irs1,LOC107577679 coding downstream 17711 1198113 ~ 1217196 (-)
LOC117599094 LOC107697487 coding downstream 112170 1121082 ~ 1122737 (-)
LOC117599093 NA coding downstream 113520 1119792 ~ 1121387 (-)
LOC113533231 LOC107568747,LOC107697496 coding downstream 115232 1117354 ~ 1119675 (-)
mffa mff coding downstream 357962 863690 ~ 876945 (-)
slc8a2b slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 coding upstream 102842 1393277 ~ 1447217 (-)
gmnc gmnc coding upstream 179385 1469820 ~ 1474274 (-)
zgc:162872 LOC108277719 coding upstream 215054 1505489 ~ 1514055 (-)
ilkap ilkap,LOC107725757,LOC107756217 coding upstream 224538 1514973 ~ 1519815 (-)
LOC113544537 dgkd coding upstream 230892 1521327 ~ 1540722 (-)
G218324 NA non-coding downstream 7092 1218231 ~ 1227815 (-)
G218325 NA non-coding downstream 12293 1221153 ~ 1222614 (-)
G218306 nyap2 non-coding downstream 73798 1160713 ~ 1161109 (-)
LOC117599090 NA non-coding downstream 106934 1123429 ~ 1127973 (-)
G218268 NA non-coding downstream 141728 1092791 ~ 1093179 (-)
G218347 NA non-coding upstream 37703 1328138 ~ 1357336 (-)
G218377 NA non-coding upstream 201965 1492400 ~ 1493405 (-)
trnag-ucc_16 NA non-coding upstream 205327 1495762 ~ 1495833 (-)
LOC113544681 NA non-coding upstream 256010 1546445 ~ 1568191 (-)
G218695 NA non-coding upstream 286446 1576881 ~ 1577211 (-)
G218302 nyap2 other downstream 80207 1154410 ~ 1154700 (-)
G218265 NA other downstream 100889 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 132023 955480 ~ 1102884 (-)
G218214 NA other downstream 355724 878772 ~ 879183 (-)
numbl numbl,LOC107374161 other downstream 487650 712895 ~ 747257 (-)
trnag-ucc_17 NA other upstream 206444 1496879 ~ 1497106 (-)
trnag-ucc_18 NA other upstream 206905 1497340 ~ 1497411 (-)
scaf4b LOC108411133 other upstream 990966 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1322422 2612857 ~ 2629901 (-)
G219642 NA other upstream 1597472 2887907 ~ 2963350 (-)

Expression


Co-expression Network