LOC113532840 (LOC108277937)



Basic Information


Item Value
gene id LOC113532840
gene name LOC108277937
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7355180 ~ 7365143 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_034310861.1
CTCCATGATGGTGTATTCATTACAAATTCTCCCAGGTTTTGGAACCACAGTAGCATCCTGGGTGTCATGAGGAGGATGAGGCCTCGAGAGGCAGcTGACTGGGACATCACAGTAATGTGTGGAACTGATAGTATCCATCTGAGCATCCTGCTGTGTCCAGTCTACTATGCTGGCTACAATGAATCTCTTATAGCCCTCAATGGAAAATTTAACACTCCAGCCTGCTGTGGAATTGTAGACTTGAAAGACAATACCCCTGTCCTGAAGTTTAATTTTGCAATCTCTGCAGATGAGATGTCTCTCTGTGACAATTCTCTTGAGCTTACAGATGAGGTGGGCACAGGCCGATTCTCTGACTCCAGAGTCCAGTTTGTCAACATTTCTGGAAGCGTCATTTCTTGGGAACCAGACAGGGGCCCCTTCACATACCACCAAAAGCTTATTTATCAATTCTCCTGCCGCTACCTGCTGCAGTATTTGGTCAACGACACTAAAGTAAATGTGTCAGGCATGAACCTAGCTGCCCGAGAGAACAGAGGAAGTTTTGTCAGGTCACTCAGTATAAATCTCTTCACTAATCGACAATATACACAGCCTCTGAAAATACCTGAAAAGGGGCTACAACTGAAAACTCGTATATATGTCCAGGTCAAAGCAAAAAATCTCACTAACAGgtTGAATGTCCTGCTCGATCGCTGCTTTACAACAGCAAGCCCTTATCCAACAAGCACAATTTATTATGATCTTTTTATTGGGTGTAGACGCGATGGGCAGACAGTGGTGTACTTAAACGGGGTATCCCAAGAAGCACGCTTTTCCTTTGAGGCCTTCCACTTTGTGGAGCACCAGAACAAGACAGTCTCCACGTTCTACCTGCACTGTGTCACCCGACTCTGTGAGAATTCCACCTGTCCCTCCATGCTTCCGaactgtataaagaaagtaagaaaggcAATCCAATTGAGTCAGAATTTAAGCAACGTGGAAACTGTTTCTTCAGGCCCAATCATGACAAGAACTGACAGTGctGCCTCAACACACTCTAAGTATAAAGACTGTGTGACGGGGGTCGCCATACTCACATGCTTGTTGAGTGTCTGCTGTACTGGACTGGTGGTGCAGATTTTGATCTACAGGAGGCATACATGTTTTTATTAGGTGACCATTTTCCTTCAATTTTCA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_034310861.1 True 1182 mRNA 0.45 9 7355180 7365143

Neighbor


gene id symbol gene type direction distance location
LOC113532980 LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794 coding downstream 71207 7276448 ~ 7283973 (-)
alcamb LOC108278292 coding downstream 101574 7229918 ~ 7253606 (-)
dyrk1ab dyrk1a,LOC108278223,LOC108435291,LOC107726100,LOC107662773 coding downstream 129634 7198831 ~ 7225546 (-)
trnap-cgg_8 NA coding downstream 159586 7195523 ~ 7195594 (-)
thap12b thap12,LOC108278397 coding downstream 159972 7187800 ~ 7195208 (-)
lim2.3 lim2.3,LOC108277938,LOC108435296,LOC103047043,LOC107748598,LOC107699889,LOC107597599 coding upstream 7271 7372414 ~ 7376065 (-)
acad8 acad8,LOC107582571 coding upstream 184684 7549827 ~ 7563594 (-)
vps26b vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589 coding upstream 206058 7571201 ~ 7576277 (-)
jam3a jam3 coding upstream 212912 7578055 ~ 7591818 (-)
cadm1b cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575 coding upstream 380156 7745299 ~ 7907858 (-)
G221844 NA non-coding downstream 134251 7218666 ~ 7220929 (-)
G221814 NA non-coding downstream 176884 7133517 ~ 7178296 (-)
G221812 NA non-coding downstream 230978 7122717 ~ 7124202 (-)
G221683 colca2 non-coding downstream 481821 6872831 ~ 6873359 (-)
G221682 colca2 non-coding downstream 483201 6871737 ~ 6871979 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding upstream 6227 7371370 ~ 7372320 (-)
LOC113532601 NA non-coding upstream 211411 7576554 ~ 7577056 (-)
G222367 NA non-coding upstream 767220 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 797490 8162633 ~ 8162848 (-)
G222391 NA non-coding upstream 831662 8196805 ~ 8197207 (-)
LOC113532805 NA other downstream 701762 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1330827 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1551207 5797928 ~ 5803973 (-)
G220990 NA other downstream 1644289 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1755805 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 27272 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1039686 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1575875 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2312116 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 2942907 10308050 ~ 10312516 (-)

Expression



Co-expression Network