LOC113532830 (LOC108277452,LOC107578747)


Basic Information

Item Value
gene id LOC113532830
gene name LOC108277452,LOC107578747
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8799467 ~ 8814548 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310866.1
TCTCCTCTACTACTCCCCATGCCTTCCTCTGCCCCAAGGGTCACTACTGTCCCCTGGGCTCTCCTGTGGCCTTGCCATGTCCCACAGGACAATATCAGCCCAACCCAGGCTCAGAGATCTGCATCCCGTGCCGTCCAGGCTTCTACTGTGAGGAGGCCATTGCAGGAGACCCCTCACCATGTCCCTCTCACTCCTACTGCCCAGCAGgCACTATGGTTCCTCAGCCATGTCCCAATGGCACATACACTTCTCCTGATGTCAGAGGtctacagagtgagagagagtgcttGGCCTGCCCACCAGGGAAATTTTGCAGGGCTGGTCAGATAAGAGGCCTGTGTGCAGCGGGATATGTGTGTATCTCAGGCAGCTCAGATTTCACCCCGCAGGGCACAGTCATGCCTAACACAAGCCACTGTGAATGGGGAGTGCAGTGTGCCGGACCCTGTCCTGCTGGTTTCTACTGCCCAAAGGGCACAGAGAAACCTCAAGCCTGCCCTGTAAATACCTTAAAGCAAACCCCTGGAGGAAGCAGCATACATGACTGTCTCTCCTGCCCACCCAGACACTGGTGCAAAGAGGGTGATCCCAAGCTCTACATGTGTCCTGAGGGTCATTACTGTGATGGTATAATTGATTATGAGTCTGAGGGTAGGCCTGGACCAAAAAAGTGTCCTCAGTTTACCTACAGACCTACTTCTGGTGCAGGAAGCAAAGGAGACTGTCTTCAGTGTCCGGCTGGAACTTTCTGCAATGCTACAGGTCTGACTGATTTCTCCAGCTTCCCCTGCCCACCTGGTTATTGGTGCAGTGGTACAGGCTTGCCAGTTCTCTGCCCTGCAGGCACTTTCAGAACTCAACCAGGGGCAAATGCTTCTAGCCAGTGCCAACTCTGTGCTGCTGGTACCTATTGCCCTGATCCTCGCCTCACAGGTCAACCTAACACTGTGGGAATTCCTTGCAGAGCCTCTTACCAGTGCCCTATAGGATCAGTGGTGGAGGTCTTATGCAGAGCAGGCTCATATTGCAGGCCACAAACTGGAGAACCCACTCCATGCCCTGCAGGATATCACTGCCCTGTAGGCTCACACACCTACAACACACCACAgcaaatGTGTACATACCCATATTACTGCCCAGCTAACACCTCAACCATGTTGTCGTGTGGTGGTGGCTTTATGCCCCGTAATTCCAGTGGCCTAAGAGTTTCTCAGGAAAGCAGCTGCATAATGTGTGAGGCAGGGACCTACCGGCCTAGTGACTCTTCTCACCTCCGCTGCCTTGCATGCCCCCCAGGCTACCACTGCCCTCCAGGCACTGATGACTACAGTAGTCAGCCATGTCCAGTTGGATATGTTTGTCCATGGGGCACAGCCAATCCTGTTGCATGCCCACCAGGCAGCTATGGCAACAGCACCAAGGCTGAGCTACTTGAGGAATGCCACCCTTGCCCTCCAGGCACATTCAACCACTTGTATGCCCAGAGAGCCTGTTTCCCATGTGGCAGCTCTTCCATATCATCACAAGGGGCATCCTCGTGCATGTGCATAGGCAAAAACCGGGCATTCCAGCACTCTGACGGTTCCTGCGTGTGTAAAGCTGGTTATGTCTTCTACAATGAACTGGACTTCAAAAGTTCCAGTGCTGACAGTGATCTAGACTGTCAACCTGAGGTGAGTAAACGCTGTGGAACTGGACAAGTGAGACTGGCTTCATCACAAGACTGTGTCAGTCCCTCTAAATACTCATGCAACATTACTTGTGGACTTCATGGAGGGAGTCTGGATGTAAGCTTGGGCATTTGTCAGTGTGAGATGTATGTCTCTGTGGAGGAGCTGTGTAACTCCTCATGTTTGTCTGCACTGCCTGTGCTATCTGCCAGACTGGCTCCAAATGGACAGCTGGTGCTCAGGATCAAAGCGATGGATGAAAGCAGGATCTGGAGCAGAAATATGATGAATGTACTGGGGCCTGACGGTCATATCAGCAACTTCGGAAAGATCCACTTGGTTCAGTTTTCTCCAGATGGAGTGTTTGGGTGGATTTTAAAGGACCCTGTGCTTATTGACATCTTTTTATCTGAGCCATTTGAAATTCTAAATGGACATCCAAGGAAGCAAAGACACACCCATGAGCTAGGATTACTGATCTCAGGGCCTCTCCCTCGCATTCCCAACCCCATAGCCTGCCTTTCCCCCAATGACATGCTCATCTTTCAGCTCACCATCAACTACTCAGACCGTCTCCTCAGCCACTTTCCAGTCTATCAAAAGAACCATTTGTTCAGCAGTAATCCTGCCTGGGACTTTGGTGCATTCAGACAACTGGAACGCCTTGTCAAACATTCCCAATATAATTCCACCAGatttgcaCATGTATTCATGGAGCCAGGGAAGTATGTGTTCCTGGACAATGCAGTGCCGGACTGGAGCCTGATAGTTGTGGTGAAAGAGGAAGGCACTGAGTGTGATcctactgcagctgccttccaGCCCACCTCTCCAGCACAGCTGGTGCGACATGGGATTGTCAAACAACAGCGCCTCAACCTGCTGCCTGACTGGGGCACCattggaggGGTATTGGCACTGATGGTGTTACTAATAGTTGTGTTGACTCTGTCTGCCCTGCTTCTGAGACCTAATCATGCCAACCTCATTGCTAAAGGCAGACCTAAGCCTAAATGGCGCAGCTTGGGAGAACCTGCGGTTCCTGTAGCGTATGTTTACAATGGAGAGTGCATGGATAGCACTCTACTGGGACTTAGGGGAGTGGGTGAAggtgcagaagaagaagaacctgCTGTGTGCAAAGGATTCAAGAATATATTCATGGAGCTGGAAGGGTTCAATGTCAAAACACTGTACGACAAATTAGAGGACCAGAATTTGCATCTGGCTTCACAGCTGGCTAAGCACCGCAAAGATACACAGGAGTTCTACAGGAATATCTGTCAGCAGACTGATGTGCTGCGGGATGTTCTGGAGAATATGGAGCCCTCAAAACTGATCCAGTGGAAGAAAATGATAGACAGTAATGCACAAGCCAAGAAGGAACTGATTTCTGTGGAGTCATCAATGGGCTTGATGGAGGCCGTGCTGAAGTCTTTAGAGGCTGTGATGTTAAGACTGAACGGAGAGGcctggcagcagcagcagcacggagacagcagagagagtcAAATCCACACCAGAAACACCCAGATTTCTTCAACTGACATGAGTGAACTGAAAGCACGGCCGGATACAGAAGCAACTTCTTCTGGCCCGGGTGGGCGGAAATGTCTTTCAGTGCCCCCTCTGAGTACAGCACCCTGTGTGAGTGAAGAGGATCTGGTCAAGCTGGTGGCGCTCACACCTCTCACCAGAACTCTGCAGGACATACAGCAGTCACTGCAAGAACTGAGCCACAAGTCCAGAACACAGGAAGATACaaGTTCTCCTTCAGCAATTCCCGACAGCCCAGCAGATTGGGCACCGGCACAGTTGATCCCTGTTGCCCTTGACAACCTCTCTCCAGGGTGCTTTGCAGTGTTCCTGTTTGGCTGCCATGTTGTACAGCTGCTGACCCAAGTCTGCTCGTTCCCTCCCGTCATGCTGCTGCTTGCTAAGGCTCTTCCAGTCACATGCACTGATTCTCTGCTGGCCTACTGCAACAAGGAGTTTTACTACGATACATCCAACCAGATCCTGTATATCCTCGAGAGCAAGCTTCAAAATGCTGGACAATTTATCTCAGTTCTCTTACACTCTATGGCCTACATTAGCTCAGGCTCTGCTCCTCGAGACTTCATGGGTGCTCTCCACTCAGCTATATCTGCCCTGAGTATGCAGTTATTCCAGCTCTCCTTCACTCAGGAGCGGCAGGAATGCATGATTAAGGAGGAGAACCCACATGTTGCCTTTGGAACAATAGTGGAGGACTTCCTCAGTGTTAAAGTACCACCAGAAACTCAATTCTCCCAGACTCTATTGGCAGAAAGATTGCAGAAGTATAAGTACTTCAAACTAGAGCATTTCCTTCAGGAACAAAAACCACCTCCGGCAAACAGATCTGCAGAAAATCCTGGTCAAATGAGCTGTAAAGTTGTAGAGCAGGAGCAAGCACTGATGTTGAAGCGTCAGCAGGACACAGTAGAGCAGAGACTGAAGGAAATGAGAGACAGGCTGTCTAACTATAGTGCAGCACAGAGAACTGTGTGTCAGGAAGAATGCCCATCCCAAACTACAGAACAAACACATCCAGACAGCCAGTCCATGAGCAAACACACAGTCAAGCCAGCTGACAACCAGGGAGCGGTCACTGAGCAGATCCCCAGCAATAAACAACACAGCAAACACGTGGATGAAGCTGCTGGGGAAAAGGACATGGTGGTTTAAGGTGGTTTTGTAGAAAATAACTACAGTACTACAGTGTAACATAGACTGTTATGATGACTTAGTGTTCTATATTACTTTGTACCTCTGTCCTGAAATTTCAAAACTGTTAGCcgtaaatacatttttactgtAATCCCTTAAACActcatttatacagttatttattttatcagtgaaaagtagaatcttagaaatactttcatgaatttcagaattccttagtatttggtatgttcCTTTTTGCTTTATTGACAGCATGCACTCAAACTGTCATGGactatttatttacactatttcagctacttgtattgtactcttgtactctttgcactattgtcactaggttcactttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310866.1 True 4732 mRNA 0.49 29 8799467 8814548

Neighbor

gene id symbol gene type direction distance location
scn3b scn3b coding downstream 3439 8775146 ~ 8796028 (-)
drd2a drd2,LOC107586233,LOC107670954,LOC107717269,LOC107709110 coding downstream 26626 8729942 ~ 8772841 (-)
zgc:162608 LOC108277432 coding downstream 152229 8645643 ~ 8647238 (-)
laynb LOC108277700 coding downstream 169313 8615437 ~ 8630154 (-)
sik2b LOC108277697,LOC108436519,LOC107657230 coding downstream 186043 8563170 ~ 8613424 (-)
mcamb mcam coding upstream 718502 9533050 ~ 9567354 (-)
c1qtnf5 c1qtnf5,LOC107690457,LOC107601727 coding upstream 771096 9585644 ~ 9589292 (-)
kmt2a kmt2a coding upstream 780406 9594954 ~ 9635702 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding upstream 822023 9636571 ~ 9648239 (-)
pdzd3a LOC108277664 coding upstream 841034 9655582 ~ 9664634 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 251093 8544912 ~ 8548374 (-)
G222591 NA non-coding downstream 308183 8464576 ~ 8491284 (-)
G222522 NA non-coding downstream 557291 8241064 ~ 8242176 (-)
G222391 NA non-coding downstream 602260 8196805 ~ 8197207 (-)
G222377 NA non-coding downstream 636619 8162633 ~ 8162848 (-)
G222852 NA non-coding upstream 222932 9037480 ~ 9043751 (-)
LOC117599042 NA non-coding upstream 943610 9758158 ~ 9758966 (-)
LOC117599044 NA non-coding upstream 987944 9802492 ~ 9806509 (-)
LOC117599021 NA non-coding upstream 1072468 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 1116808 9931356 ~ 9978560 (-)
sorl1 sorl1,LOC107717255 other downstream 320555 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 1335968 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 2146049 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 2775114 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 2995494 5797928 ~ 5803973 (-)
G222809 oaf other upstream 126470 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 862711 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 1493502 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 1893704 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 2373702 11188250 ~ 11220656 (-)

Expression


Co-expression Network