prg4a



Basic Information


Item Value
gene id prg4a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17800084 ~ 17808962 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_034310879.1
GTCCTCGTCCAGTCGAGAAATCCAGCTGCTCAGTGCTATATAAGAGACAAAAGTGCAGCAGAAAGAAACATTCTGACTTCGACAAGATCACCTGCAGATTTTGCTGTTTGGATCATTCAGTGCTGAAAGTGAACAGGTTGAACCCGAGTGTTAGGAGAGCTACGATGGCTGGATGGACTCTGATTTCCTCTGTGCTGCTGATGGCCTGCGTCCTGCCGCAGCTTTGTGCCGCTCAAAaGAGCTGCAGTGGGCGATGTGGAGAGCCATTCTTGCGTGGGCAGATCTGTACTTGCGATGCTGACTGTCTCACTCACAGTGAATGCTGCAAGGACTACGAGGACGTCTGTACCTCCCGTGGCTCATGCAGGGGTCGATGCCGGGAAGCTTTcaggagagggagggagtgtgagtgtgaccCTGACTGCACCCTCTACAACTCCTGCTGTCCTGACTACAGCTTACACTGCGATATGAATTACAGTGCACCAGAAGTCAGGACCAGCAAAAAGTCAGAAGgaGGCAGCGTTGTGGATCTAGTGCCACTGACTGAAGATCTAGCAGCACCTTCTCCTGCTGATGCTAATCTTTACCTGACTACTCCTCCTGCAAACCTTGTGGAAAACACACCAGGCGCACCCCTTGCTGGAGCTTCCTCTCCTGGAGCACCCCTCGCAGATGGAAATGGACACGTCCAGGATTCCATCTCCATTAGCGGTCAAGCAAGTGGTATCACTAATCAACCCTCTGGTGTCTCTGAGCCATCTGCTGGAAGACCAAGCACGCTGACGGACATAGCTCAGGCTCTGGAGGCTGCCAATGCAGCAGGACAGCCACACCAGAGCTCTAGCCCTGACCTCTGTGATGGCCTCCCAATCGACGGTGTGACATCACCATTCAATGGCTCCATCATTGTTTTCCAAGGTCATTTCTTCTGGATCCTGGACCCCAAGACCAGAACAGCTGGTCCTGCACGCAGTATTTCAGCAGACCTGGGCATTCCCTCGCCTATCGACACAGCCTTCACGCGCTGCAACTGCGAGGGCAATACCTACATTATCAAGGATGATAACTACTGGAGTTTTCAGAATGGGGTGACGGAGCCTGGCTACCCCAGATCTGTGTCCAAGGACTTTGGAGGGCTCTCGGGAAGAATTGTTGCTGCTCTCTCTATCCCTGCCACCAGGAACAGGCCTGAGACTGTTTACTTCTTCAAGAAAGGAGGTATAGTGCAGAAGCTCACCTACCCTGCTGGAAGTGGGCCGACCTGCACtgggaaaaaggaaagaatgcaGTGTCCGCTAAGAATCGCCAACCAGAACGGGCACACCCGTCTCTCCGGAGAGATCAACATTACACTGAAGTGGAAGGGATTCCCCACCCCGGTGACCTCTGCTCTCTCCATGCCCAACTCCAGGAAGCCCGATGGGTTCGAACACTACATCTTCTCCTGGCCTAAAGTCTTCAGCATTAAGATCAGCAGTGAGATTCCTGTTCTGGAGTCTCCTGGAAAGCCGTCTGCTGAGAATGACGTCAGAAACTGGCTCAACTGTCCTCAATAGATAAACCCAAAGCAAAGAAACCAGAGCTTGGCACTCATCAGCAAGCCACTTTTTATTAGCAAAAACACTGAACAGCTTTATTCATTATTAGCAAAACATTGAACATCATTCATAAAGTACAAAATAGCAATTTGAAATCATAATTAAGCAAACTGAAGCTAACTACAGAACATAAAATTTATATGTACAAAAGAAAACTGTTGCACTGAATTTGTAGCTGtatgtctttaaacatttttggctgaaaaatgGGAGATTTCACAACTAGTAGAGATGTTAGAACGGCGTGCCTCTGTTGAACCCTCGGCCACGGCCACCACGAGGATAGCCTATACCtgaggggagaaagagagaaggaaaaagaaattagatttaaaaaaaaaaaaaaaaa

Function


NR:

description
PREDICTED: proteoglycan 4-like, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_034310879.1 True 1950 mRNA 0.49 14 17800084 17808962

Neighbor


gene id symbol gene type direction distance location
odr4 c17h1orf27 coding downstream 28024 17759657 ~ 17772060 (-)
pla2g4aa pla2g4a,LOC107722605,LOC107693742,LOC107718137,LOC107677770,LOC107594671 coding downstream 90465 17694739 ~ 17709619 (-)
arpc5a arpc5b,arpc5,arpc5a,LOC108277766,LOC108431159,LOC103032016,LOC107599090,LOC107698380 coding downstream 108730 17685877 ~ 17691354 (-)
niban1b fam129a coding downstream 125420 17645397 ~ 17674664 (-)
dhx16 dhx16,LOC107704755 coding downstream 180192 17600050 ~ 17619892 (-)
rxrga rxrga,LOC108278312,LOC108431152,LOC107718143,LOC107677771,LOC107589872,LOC106599103 coding upstream 3956 17812918 ~ 17823904 (-)
olfml2bb LOC108277438 coding upstream 69236 17878198 ~ 17888752 (-)
agla agl,agla,LOC108441576 coding upstream 119392 17928354 ~ 17961448 (-)
si:ch211-153l6.6 LOC108277520 coding upstream 154028 17962990 ~ 17972925 (-)
palmda LOC108277529 coding upstream 166669 17975631 ~ 17985549 (-)
G227786 NA non-coding downstream 310652 17486631 ~ 17489432 (-)
G227755 NA non-coding downstream 392859 17405948 ~ 17407225 (-)
G227640 NA non-coding downstream 492360 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding downstream 494722 17302063 ~ 17305362 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding downstream 636499 17161511 ~ 17163585 (-)
G228131 NA non-coding upstream 265634 18074596 ~ 18074799 (-)
G228188 NA non-coding upstream 608492 18417454 ~ 18418564 (-)
G228483 NA non-coding upstream 796965 18605927 ~ 18608241 (-)
G228564 NA non-coding upstream 1202462 19011424 ~ 19012679 (-)
G228635 NA non-coding upstream 1539677 19348639 ~ 19348839 (-)
psenen psenen other downstream 361470 17434055 ~ 17438614 (-)
LOC113539242 LOC108277733,LOC108277732 other downstream 549930 17230756 ~ 17250154 (-)
si:dkey-118k5.3 LOC108277747 other downstream 1435748 16354664 ~ 16364336 (-)
G227205 NA other downstream 1482739 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 1635048 16119297 ~ 16165036 (-)
rwdd3 rwdd3 other upstream 579546 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 752460 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 1762711 19571673 ~ 19572614 (-)
G228758 NA other upstream 1899353 19708315 ~ 19708841 (-)
gdpd5b LOC108277648,LOC108433002,LOC103039705 other upstream 3942173 21751135 ~ 21811084 (-)

Expression



Co-expression Network