cwf19l2 (cwf19l2)


Basic Information

Item Value
gene id cwf19l2
gene name cwf19l2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1949981 ~ 1965960 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310930.1
TTACGACACCACACACCATGTTTGCGGCACCGCCCGCCTCGGTTTCCGGCAGCGTCATGGCGGCCTACGCGGGTGGGTTTCAAAGCGCAGGCAGCATCGAGGAGAAAAGAGATTTAAAGCGCAAAGCGCGTGAAGAAATCCTCCAAAAGgccAAACATCAGTATGAGGAAGACAAGCGGAAAGAGGAACAGAGGAAGGCTCGATGTGAAGACACCTGGATGCTCCCAGATGTTGAGCAGCGGCTGCAGCAGatcagtgagGACTATTCTGTAAaaggcaagaagaagaaaaaggagaaatccaagaagaagaagaaggagaagaagaagaaagtgaagAAAGAGAAGCCGAAATCCCAGGGTGATGGCTCATCCGATAGCTCAGAGGACTCTGATGATTGGGTGGAGGCTCCGCCCCCAACAGGAAGTGTGGATAAAGCATGGAAGGTCTCGGACCAGGCTCAGACCACGAGTAGCTCGACCAGTAGTGGCCAACAGAGAGACGAGTGGATGACCTTTGACTTCCTGGCCCTGAAGACGACATCGGTTGCCGAGCGACGAGCCGAGAAGGAGGCGGAGAAGGAGGCGGAGCGAGAAAAAGCGCAGAGCCTTGAACAGGCTGGCCTTCACAGACTGGAGCTGAATCCTTATTGGAAGAATGGAGGGAGTGGGCTGCCCCCGGAGGAAGGTGCCAGTACTGCAGTTACTAAagcggGCGTGGTGGATGATGGAGGACGGAGCTGGCTCATGAAGTCATATCAGAGGATGAAggagcaggcagagagagagcagcgCAGCCTGGATGACGTGGTGGCTGAGAGATAcgggtccATGGAGCAGTTTCAGAAGAGACTGAAGGAAGCAGAAGAGGCCACCTTCTCACagaggagagatgagagagacatggggaggaaaggagagggaGACGGAAGGAGACAGGGGTGGaggagagagacaaacagggacagggacagagagagagacagggacagagagagagacagggacagagagaggcatagggaaagacagagagacatggGTAGAGACCAgtggacagaaagagacagagagcgggacagggacagagagcgagacagggacagagagcgggacagggacagagagcgggacagggacagagagcGGACAGGACAGAGAGCGGACAGGGACAAGGAGAAGGAtatagaaagacagaaggacatgacgagggacagagggacagagagagaaagaggacgTTTCCTCAAACCCTCCGACTCTGATGACTTCCTGCCTCTGGGGGCAGGCTTTAGGAGGCCTGGATTGACAGCCTCCTCatccaatcagagtgcagggaAGTTCCTGAAAcctggagatgatgatgatgatgatgacgatgatgttCCAGCATGGAGGAAGAGTGAAGAGAAGAAGGATGGagtgaaagagaaggaggagtcAGGGACACAgaagagggaggaagagagtaGGACTGCTCCAGTGCAGAAGAGCAGctcagagagtgaggaagaggaagaagaagaggaagtgCGGCTCCTGACAGATGAGGAGATGAATAAACTCGGGGCCAAACTTCTCAAGGCCGAGCTCATGGGGAATACGgctctAATGGACTCTCTGAAGGCTCAGCTAGAAGCTGCGCGGAAGGCGAGAGAGAATCATGCTCACAAACCCAAACAGGTGTCTGTGCAGGAGGAGGCGGAACAGGAAGTGGTCTTGTTCAGAACGGACCAATCAGGACGAGCGTGGCCAGTGAGTGGCCCCTCCCAGCACGTGGAGCCGAAAGcagggaggaggaagaagaaagcgATCGAGACCCATGTTGCTGGCGAGCGTGTGCGTTACTTTGCAGATGATGACAGTTTGGATCTGAAGGAGATGGTGCGCCGGGAGAAGATGACCTCAGCTCAGGATCAGAATGCCCTCTACTCACGCATGGCTGCTAAGaTGATGGGCAAGCAGGATGGCGATAACTACACACTGGACGACATGTTCGTATCGAGCGCAGctcagagagaaagggaggggcTTGATGAAGAGAGAGCGAGGAACCGAGCGATGAGGGAGGGGCGGAGCCTCGCCACACGAATGGATAAATGCCCGTTCTGCTTCAGCAACACCGAGCTGCCCAAACACCTGGTGGTGGCTATTGGGGCAAAGgtgtatcTTTGTCTTCCTAACAGTGTCTCTCTGACTGAGGGACACTGTCTCATTGCTCCACTGCAGCACCACTGCTGCGCAACTGGCCTTGACGAGGACGTGTGGAATGAACTACAGgTGTTCCGCAAGTCGTTGGTTCAGATGTTCAATTCGCTTGGTCTCGACTGCGTGTTTTTAGAAACTCACATGAACCCCAAGAAGCGCATGCATATGCTGTATGAGTGTGTTCCACTTCCACGGGAGCTTGGCGATATGGCACCCGTCTACTTCAAGAAAGCCATCATGGAGTGTGATGAGGAGTGGGCGATGAATAAGAAGGTGGTGGAGCTGTCATCCAAGAACATCAGACAGGCTgttcCGCGTGGTTTGCCGTACTTCTCTGTCGATTTTGGGTTGCAGGGAGGATTCGCTCACGTCATTGAAAATCAAGACAAGTTTCCATATTACTTTGGGAAAGAAGTCCTCGGTGGTATGTTGGACCTAGAGCCGAGGCGATGGAGGAAGCCGATCCGCGAGAACTTTGATGATCAACGTAAGAAGGTCCTGCAGTTCTCCCAGTGGTGGAAACCCTTCGACTGCACCAAGAGCCAATAAGAGATCTGCTTTCATCTTGGGGGTGGGGTCAGACTCAGAGTTGGAGTCTGTCCTGTCTATAATCTATATAATAACACAAACGCTGTATCATAGAGCTGGAACATTAaagttttgttgatttttaa

Function

symbol description
cwf19l2 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of post-mRNA release spliceosomal complex. Orthologous to human CWF19L2 (CWF19 like cell cycle control factor 2).

NR:

description
CWF19-like protein 2

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K24940 CWF19L2; CWF19-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310930.1 True 2881 mRNA 0.53 19 1949981 1965960

Neighbor

gene id symbol gene type direction distance location
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding downstream 3825 1923668 ~ 1946156 (-)
pdgfd pdgfd coding downstream 136900 1798680 ~ 1813081 (-)
fzd4 fzd4 coding downstream 259397 1682765 ~ 1690584 (-)
LOC113544557 parl coding downstream 352509 1592593 ~ 1597472 (-)
cldn15lb cldn1 coding downstream 361526 1581397 ~ 1588455 (-)
trnag-ucc_22 NA coding upstream 3452 1969412 ~ 1969483 (-)
naalad2 folh1b,LOC107670141,LOC108412465 coding upstream 53348 2019308 ~ 2035377 (-)
tyr LOC108277956 coding upstream 86829 2052789 ~ 2059593 (-)
LOC113544627 NA coding upstream 235542 2201502 ~ 2203363 (-)
rwdd2b rwdd2b coding upstream 279924 2245884 ~ 2249335 (-)
G218840 NA non-coding downstream 430 1949278 ~ 1949551 (-)
G218825 NA non-coding downstream 31961 1917713 ~ 1918020 (-)
G218773 NA non-coding downstream 163007 1777746 ~ 1786974 (-)
G218768 NA non-coding downstream 179529 1770215 ~ 1770452 (-)
G218720 NA non-coding downstream 267894 1624484 ~ 1682087 (-)
G218850 NA non-coding upstream 12082 1978042 ~ 1980907 (-)
G218950 farsb non-coding upstream 261535 2227495 ~ 2266728 (-)
G218972 NA non-coding upstream 314293 2280253 ~ 2280779 (-)
G218917 NA non-coding upstream 370792 2336752 ~ 2419491 (-)
G219576 NA non-coding upstream 645434 2611394 ~ 2612161 (-)
trnag-ucc_18 NA other downstream 452570 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 452875 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 795281 1154410 ~ 1154700 (-)
G218265 NA other downstream 815963 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 847097 955480 ~ 1102884 (-)
scaf4b LOC108411133 other upstream 315441 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 646897 2612857 ~ 2629901 (-)
G219642 NA other upstream 921947 2887907 ~ 2963350 (-)
G219651 NA other upstream 941366 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 1761417 3727377 ~ 3807114 (-)

Expression


Co-expression Network