LOC117599112


Basic Information

Item Value
gene id LOC117599112
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17299219 ~ 17299613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310936.1
TCCAGATGGATCCAGCCAAGACCCTGGCCGTCCGGGACTGGCCCACTCCCAAGTCCGTTAAAGAAGTGCAGCGGTTCTTAGGATTTGCTAACTTCTACCGCAAGTTTGTCAGGAACTTCAGTTCTGTAGCAGCGCCCATATCAGACTTCACCAAAAAGACTAGTGGATCTTATGTCTGGTCTCCTCAGGCGGAAAAGGTGTTCAGGGACCTCAAGCATCGCTTCTGCACGGCACCCATTCTGGTCCTCCCGGACACATCGCAACCATTCGTCGTCGAGGTGGACGCCTCGGACAATGGTGTCGGCGCAGTCCTCTCTCAACGCTCGGATGGCAGGTTGCACCCCTTCGCTTTCCAGGCTATTCTCGTCCACCAACAGGGAGAGTGAAGTTAGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310936.1 True 395 mRNA 0.55 1 17299219 17299613

Neighbor

gene id symbol gene type direction distance location
LOC113539358 LOC108277878 coding downstream 16906 17275928 ~ 17282313 (-)
LOC113539359 LOC108277878 coding downstream 24000 17262576 ~ 17275219 (-)
tmem106ba tmem106b,LOC107730846,LOC107683194 coding downstream 143253 17146935 ~ 17155966 (-)
LOC113539219 LOC108278006,LOC108426917,LOC107588234,LOC107752288,LOC107683449,LOC107582297 coding downstream 153958 17142345 ~ 17145261 (-)
si:dkey-30e9.6 NA coding downstream 185959 17109523 ~ 17113260 (-)
LOC113539084 NA coding upstream 17741 17317354 ~ 17326799 (-)
LOC113539361 NA coding upstream 28506 17328119 ~ 17337894 (-)
lin37 lin37 coding upstream 114411 17414024 ~ 17420461 (-)
hspb6 LOC108277671 coding upstream 130139 17429752 ~ 17432316 (-)
gabbr1a gabbr1,gabbr1a,LOC108277950,LOC108432983,LOC107586826,LOC107683297 coding upstream 218394 17518007 ~ 17568547 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding downstream 135634 17161511 ~ 17163585 (-)
G227440 NA non-coding downstream 386059 16912959 ~ 16913160 (-)
G227405 NA non-coding downstream 524144 16774853 ~ 16775075 (-)
LOC117599111 NA non-coding downstream 576027 16717249 ~ 16723192 (-)
G227319 NA non-coding downstream 655134 16643860 ~ 16644085 (-)
LOC117599113 NA non-coding upstream 2450 17302063 ~ 17305362 (-)
G227755 NA non-coding upstream 106335 17405948 ~ 17407225 (-)
G227786 NA non-coding upstream 187018 17486631 ~ 17489432 (-)
G228131 NA non-coding upstream 774983 18074596 ~ 18074799 (-)
G228188 NA non-coding upstream 1117841 18417454 ~ 18418564 (-)
LOC113539242 LOC108277733,LOC108277732 other downstream 49065 17230756 ~ 17250154 (-)
si:dkey-118k5.3 LOC108277747 other downstream 934883 16354664 ~ 16364336 (-)
G227205 NA other downstream 981874 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 1134183 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 1454436 15812389 ~ 15844783 (-)
psenen psenen other upstream 134442 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 1088895 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 1261809 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 2272060 19571673 ~ 19572614 (-)
G228758 NA other upstream 2408702 19708315 ~ 19708841 (-)

Expression


Co-expression Network