LOC113532601


Basic Information

Item Value
gene id LOC113532601
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7576554 ~ 7577056 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403360.2
GGTCTTTAGTCCGTGtacaagtgcactacatagtaaATGACACAACCTCTTCTGTGAGCCTATGTAGTGCAGAATGCACGCAATAGGGAGtgatttgggattcagcctgtGACTTTAGCAGTTGTTAAAGCACGTCTTCTTTAAAACAGCCGACGCCTGAGAGGAAATGAGAAGCGTTTGACTGCAGCTAGTTTCACAGCTCAGTCAGACCTTCGGTGCTACAAGTGTTTCgcaagattacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403360.2 True 264 lncRNA 0.46 2 7576554 7577056

Neighbor

gene id symbol gene type direction distance location
vps26b vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589 coding downstream 277 7571201 ~ 7576277 (-)
acad8 acad8,LOC107582571 coding downstream 12960 7549827 ~ 7563594 (-)
lim2.3 lim2.3,LOC108277938,LOC108435296,LOC103047043,LOC107748598,LOC107699889,LOC107597599 coding downstream 200489 7372414 ~ 7376065 (-)
LOC113532840 LOC108277937 coding downstream 211411 7355180 ~ 7365143 (-)
LOC113532980 LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794 coding downstream 292581 7276448 ~ 7283973 (-)
jam3a jam3 coding upstream 999 7578055 ~ 7591818 (-)
cadm1b cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575 coding upstream 168243 7745299 ~ 7907858 (-)
LOC113532837 LOC108277602 coding upstream 545358 8122414 ~ 8137209 (-)
dixdc1a dixdc1 coding upstream 626606 8203662 ~ 8212072 (-)
sdhdb sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715 coding upstream 914732 8491788 ~ 8498469 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding downstream 204234 7371370 ~ 7372320 (-)
G221844 NA non-coding downstream 355625 7218666 ~ 7220929 (-)
G221814 NA non-coding downstream 398258 7133517 ~ 7178296 (-)
G221812 NA non-coding downstream 452352 7122717 ~ 7124202 (-)
G221683 colca2 non-coding downstream 703195 6872831 ~ 6873359 (-)
G222367 NA non-coding upstream 555307 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 585577 8162633 ~ 8162848 (-)
G222391 NA non-coding upstream 619749 8196805 ~ 8197207 (-)
G222522 NA non-coding upstream 664008 8241064 ~ 8242176 (-)
G222591 NA non-coding upstream 887520 8464576 ~ 8491284 (-)
zgc:77784 LOC108277423 other downstream 113055 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 923136 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1552201 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1772581 5797928 ~ 5803973 (-)
G220990 NA other downstream 1865663 5710098 ~ 5710891 (-)
sorl1 sorl1,LOC107717255 other upstream 827773 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1363962 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2100203 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 2730994 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 3131196 10708252 ~ 10721333 (-)

Expression


Co-expression Network