LOC117599045


Basic Information

Item Value
gene id LOC117599045
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5349680 ~ 5353368 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579477.1
GACGGTGAGGTCCTGCAGCGGGTCGGCCGGACACCAGAGGAGCACCGCAGACACTTCCAGTTGCTGCAGCTCACAGAGCTcctgcaacacagaacactcaTAAGTAAAATTCCCCACAGGTGTTcattccttaccactcaccttctccggctctgccctccattcacaaactggtGCTCAACCGCTCCTCTGCTTCCACATACCCCCACCACCCGACTCAGGCATGTGAAGCCGTCCAGCCTGCCACCATCTACTGCCCACTGCCTGCAAAAAATTAGGGAGCGAGAAGTCAAGAGAATGTAAAAGTGGTCTGCCACCAGTGGTGGACGAAGTACACAAACCAAGTACTTGAGTTAAAGTAGAGATACACTAGGTAAAATATTACTCAAGTAGAAGTAAAAGTGCTCCCTTTAcactttcacttgagtaaaagtacaaaagtatTTGCCTTCAAATGTACTTAAGTATCCAAAGTTCTATGATTTATTATGGCTATAATATCTTATCATTTTTGTCACAAGACTCTTGCTTAATCAACAATATGTGAAAAGACTCTAATGTTACTCTTAGCACACCGATCTATTAATAGAATGATATTAATTAGTCAGACACTTATGTCTATTAAAATTATCATGAGCTCAAAACCTTGAAGCTAATCAATTTTCTTTAGAATCAAATGAAATAACAGGATTTCAGAGCAGGCAGTTTCAATTTAAGTTTTCAGTTTATTTGTAACATAGTTGCAAGTTtaagtttaataaaaacttgTATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579477.1 True 775 lncRNA 0.40 2 5349680 5353368

Neighbor

gene id symbol gene type direction distance location
kbtbd3 kbtbd3 coding downstream 206713 5137303 ~ 5142967 (-)
tomt LOC108277653,LOC107679441,LOC108411353,LOC107557662 coding downstream 235725 5110668 ~ 5113955 (-)
folr LOC108277654 coding downstream 250690 5094843 ~ 5098990 (-)
inppl1a inppl1,LOC108261207 coding downstream 258081 5054916 ~ 5091599 (-)
stard10 stard10,LOC108278271,LOC106581404 coding downstream 361431 4978933 ~ 4988249 (-)
LOC113532789 flj13639,LOC108278219,LOC108433977,LOC103025652,LOC107725108,LOC107670134,LOC107669913 coding upstream 40450 5393818 ~ 5403318 (-)
LOC113532491 dnhd1 coding upstream 97907 5451275 ~ 5488244 (-)
si:ch211-149e23.4 LOC108278242 coding upstream 182830 5536198 ~ 5549047 (-)
diabloa LOC108278350 coding upstream 253336 5606704 ~ 5609015 (-)
LOC113532847 LOC108277604 coding upstream 268138 5621506 ~ 5622471 (-)
G220816 NA non-coding downstream 7114 5342069 ~ 5342566 (-)
LOC117599070 NA non-coding downstream 334737 5013148 ~ 5014943 (-)
G220705 NA non-coding downstream 353986 4948544 ~ 4995694 (-)
LOC117599069 NA non-coding downstream 444383 4902623 ~ 4905297 (-)
G220694 NA non-coding downstream 460467 4888864 ~ 4889213 (-)
G220822 NA non-coding upstream 50713 5404081 ~ 5404283 (-)
G220826 NA non-coding upstream 63417 5416785 ~ 5416995 (-)
G220834 NA non-coding upstream 90124 5443492 ~ 5443702 (-)
G220858 NA non-coding upstream 101228 5454596 ~ 5454923 (-)
G220864 NA non-coding upstream 135407 5488775 ~ 5489008 (-)
LOC113544632 arap1 other downstream 378161 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 1532845 3740282 ~ 3816835 (-)
igsf11 igsf11 other downstream 1542566 3727377 ~ 3807114 (-)
G219642 NA other downstream 2386330 2887907 ~ 2963350 (-)
nectin3a LOC108278241 other upstream 197051 5550419 ~ 5599375 (-)
G220990 NA other upstream 356730 5710098 ~ 5710891 (-)
LOC113532612 LOC108277970 other upstream 444560 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 667777 6021145 ~ 6024353 (-)
LOC113532805 NA other upstream 1265804 6619172 ~ 6653418 (-)

Expression


Co-expression Network