LOC117599072


Basic Information

Item Value
gene id LOC117599072
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1603411 ~ 1616938 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579504.1
gagagagagagagagagagagagagaggaggagatgtGCAAAGCTCAGAGGAGAAACTGAACAGCCAGCATCTTCAGCTGAAGAGCTGTCACTGGAGGCGAGCGCGGATGGAAACAGCAGCCTCGCAGCCAAACACAACACGATCATCATTCGAATACGCcgtgagaacactgttgctaggcaacaagGAAACACGGACATGTTctcatggcagtcactgaaagcacaaagaaacacacacaagtaggCTGGTGGTAATAAGACGCAGTGAGACTCATCACGCGTCACCTGCCGGTtcgacccgcctcctctccgtccGACACTCGACCACGCCCCCTGCTGCAACAGAACAGTAGagctCCTTAGTATATTCACAGTAAATAGAAAGCTTGCCGGAAAGTTCCACAGGACATCTTGTGGAGACCAAGTATTAATTCGAGTGAAGCAGCTGAGGAACAAGTTCAGGAGTTGATTACTGGTGGCAGCTGCACAAGAAATGACCTGGAACTATAAGTTCTGTACAAATCTCTTCAGTTCCAGAATGCGCTACTTGAACATCGTATTGTTTAAAAGCTTCAGGTTGATCTCAAGGAAATTCTTCAAGATGGAAACATGAAGGCTGCattatttcttttacttaaatagaagaaaaaaagcgaggctgAGGAATGTGAGGAGCTGCTGCAGGCCTTAAGAATCTCGGTGCTAATGGATCTTGCTCCTTTTAAGAGGAAATGCAACCCTGGTCCAGACTGCATCCAGGCAAAGGTACTTAAGGAGAGGACCACGGAAATTTCTCCTGTCTtgcactcagtctttttttgAAATCCATCAACCTACTTCTTCACCATAGATACAGCCACCAGAAGGAACAAACTCATCAAGCTTGCAGCTACTTCCTTTAAAATTACACTTCTTCAAAATTACAGAACCCTGGTGTGAAGAGTACTTATAAGAATCCTCACTAGTGCAGGATCGGCTGCAGATTCCCGCTTTAACTCTGTCAGTCATCAGACCACAACAGCAACACAACTGTAAACATCGTCTACGGCAGCCAGGGCTTGGCATCTCTTCTGCATGTGTTTGGGTGGCTTCGGGTGAGATGATCGACTGTTTGAAACTTAAAGCCAGAATCAATAACCACAGCAGCGTAACACACTGTCCACACAACTCAGGttacgcacacaaacacagtacaGAGGTTAAAGCAGGTTAAGCACATCATTTAGTGGTTAGCAATTTGGTTTAAAGATTAGGGTTTAGCAGTTCAAGGTTAATATTAGATACTGAAGTAACAATTTAGGGTTTAGTGTACGTGgttccacagctcagatgggaaAAAAGAGCTGTTTATAGGACATCCATAGCCTGGATGTCATTCCACAAAGCTGCCAGAGTTGCGAGCCATATGAAATCCCGTGTGAAGTTTGCCAGTAGGCATGTTGGAGGCACAAAA
>XR_004579505.1
gagagagagagagagagagagagagaggaggagatgtGCAAAGCTCAGAGGAGAAACTGAACAGCCAGCATCTTCAGCTGAAGAGCTGTCACTGGAGGCGAGCGCGGATGGAAACAGCAGCCTCGCAGCCAAACACAACACGATCATCATTCGAATACGCcgtgagaacactgttgctaggcaacaagGAAACACGGACATGTTctcatggcagtcactgaaagcacaaagaaacacacacaagtaggCTGGTGGTAATAAGACGCAGTGAGACTCATCACGCGTCACCTGCCGGTtcgacccgcctcctctccgtccGACACTCGACCACGCCCCCTGCTGCAACAGAACAagctCCTTAGTATATTCACAGTAAATAGAAAGCTTGCCGGAAAGTTCCACAGGACATCTTGTGGAGACCAAGTATTAATTCGAGTGAAGCAGCTGAGGAACAAGTTCAGGAGTTGATTACTGGTGGCAGCTGCACAAGAAATGACCTGGAACTATAAGTTCTGTACAAATCTCTTCAGTTCCAGAATGCGCTACTTGAACATCGTATTGTTTAAAAGCTTCAGGTTGATCTCAAGGAAATTCTTCAAGATGGAAACATGAAGGCTGCattatttcttttacttaaatagaagaaaaaaagcgaggctgAGGAATGTGAGGAGCTGCTGCAGGCCTTAAGAATCTCGGTGCTAATGGATCTTGCTCCTTTTAAGAGGAAATGCAACCCTGGTCCAGACTGCATCCAGGCAAAGGTACTTAAGGAGAGGACCACGGAAATTTCTCCTGTCTtgcactcagtctttttttgAAATCCATCAACCTACTTCTTCACCATAGATACAGCCACCAGAAGGAACAAACTCATCAAGCTTGCAGCTACTTCCTTTAAAATTACACTTCTTCAAAATTACAGAACCCTGGTGTGAAGAGTACTTATAAGAATCCTCACTAGTGCAGGATCGGCTGCAGATTCCCGCTTTAACTCTGTCAGTCATCAGACCACAACAGCAACACAACTGTAAACATCGTCTACGGCAGCCAGGGCTTGGCATCTCTTCTGCATGTGTTTGGGTGGCTTCGGGTGAGATGATCGACTGTTTGAAACTTAAAGCCAGAATCAATAACCACAGCAGCGTAACACACTGTCCACACAACTCAGGttacgcacacaaacacagtacaGAGGTTAAAGCAGGTTAAGCACATCATTTAGTGGTTAGCAATTTGGTTTAAAGATTAGGGTTTAGCAGTTCAAGGTTAATATTAGATACTGAAGTAACAATTTAGGGTTTAGTGTACGTGgttccacagctcagatgggaaAAAAGAGCTGTTTATAGGACATCCATAGCCTGGATGTCATTCCACAAAGCTGCCAGAGTTGCGAGCCATATGAAATCCCGTGTGAAGTTTGCCAGTAGGCATGTTGGAGGCACAAAA
>XR_004579506.1
gagagagagagagagagagagagagaggaggagatgtGCAAAGCTCAGAGGAGAAACTGAACAGCCAGCATCTTCAGCTGAAGAGCTGTCACTGGAGGCGAGCGCGGATGGAAACAGCAGCCTCGCAGCCAAACACAACACGATCATCATTCGAATACGCcgtgagaacactgttgctaggcaacaagGAAACACGGACATGTTctcatggcagtcactgaaagcacaaagaaacacacacaagtaggCTGGTGGTAATAAGACGCAGTGAGACTCATCACGCGTCACCTGCCGGTtcgacccgcctcctctccgtccGACACTCGACCACGCCCCCTGCTGCAACAGAACAGTGGCAGCTGCACAAGAAATGACCTGGAACTATAAGTTCTGTACAAATCTCTTCAGTTCCAGAATGCGCTACTTGAACATCGTATTGTTTAAAAGCTTCAGGTTGATCTCAAGGAAATTCTTCAAGATGGAAACATGAAGGCTGCattatttcttttacttaaatagaagaaaaaaagcgaggctgAGGAATGTGAGGAGCTGCTGCAGGCCTTAAGAATCTCGGTGCTAATGGATCTTGCTCCTTTTAAGAGGAAATGCAACCCTGGTCCAGACTGCATCCAGGCAAAGGTACTTAAGGAGAGGACCACGGAAATTTCTCCTGTCTtgcactcagtctttttttgAAATCCATCAACCTACTTCTTCACCATAGATACAGCCACCAGAAGGAACAAACTCATCAAGCTTGCAGCTACTTCCTTTAAAATTACACTTCTTCAAAATTACAGAACCCTGGTGTGAAGAGTACTTATAAGAATCCTCACTAGTGCAGGATCGGCTGCAGATTCCCGCTTTAACTCTGTCAGTCATCAGACCACAACAGCAACACAACTGTAAACATCGTCTACGGCAGCCAGGGCTTGGCATCTCTTCTGCATGTGTTTGGGTGGCTTCGGGTGAGATGATCGACTGTTTGAAACTTAAAGCCAGAATCAATAACCACAGCAGCGTAACACACTGTCCACACAACTCAGGttacgcacacaaacacagtacaGAGGTTAAAGCAGGTTAAGCACATCATTTAGTGGTTAGCAATTTGGTTTAAAGATTAGGGTTTAGCAGTTCAAGGTTAATATTAGATACTGAAGTAACAATTTAGGGTTTAGTGTACGTGgttccacagctcagatgggaaAAAAGAGCTGTTTATAGGACATCCATAGCCTGGATGTCATTCCACAAAGCTGCCAGAGTTGCGAGCCATATGAAATCCCGTGTGAAGTTTGCCAGTAGGCATGTTGGAGGCACAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579504.1 True 1456 lncRNA 0.45 7 1603411 1616938
XR_004579505.1 False 1452 lncRNA 0.45 7 1603411 1616938
XR_004579506.1 False 1330 lncRNA 0.46 6 1603411 1616938

Neighbor

gene id symbol gene type direction distance location
LOC113544557 parl coding downstream 5939 1592593 ~ 1597472 (-)
cldn15lb cldn1 coding downstream 14956 1581397 ~ 1588455 (-)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 22382 1560569 ~ 1581029 (-)
sagb LOC108411842,LOC107756220,LOC107670108,LOC107689591,LOC107600819 coding downstream 45107 1546943 ~ 1558304 (-)
LOC113544537 dgkd coding downstream 62689 1521327 ~ 1540722 (-)
fzd4 fzd4 coding upstream 65827 1682765 ~ 1690584 (-)
pdgfd pdgfd coding upstream 181742 1798680 ~ 1813081 (-)
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding upstream 306730 1923668 ~ 1946156 (-)
cwf19l2 cwf19l2 coding upstream 333043 1949981 ~ 1965960 (-)
trnag-ucc_22 NA coding upstream 352474 1969412 ~ 1969483 (-)
G218695 NA non-coding downstream 26200 1576881 ~ 1577211 (-)
LOC113544681 NA non-coding downstream 35220 1546445 ~ 1568191 (-)
trnag-ucc_16 NA non-coding downstream 107578 1495762 ~ 1495833 (-)
G218377 NA non-coding downstream 110006 1492400 ~ 1493405 (-)
G218347 NA non-coding downstream 246075 1328138 ~ 1357336 (-)
G218720 NA non-coding upstream 7546 1624484 ~ 1682087 (-)
G218734 NA non-coding upstream 58826 1675764 ~ 1676214 (-)
G218768 NA non-coding upstream 153277 1770215 ~ 1770452 (-)
G218773 NA non-coding upstream 160808 1777746 ~ 1786974 (-)
G218825 NA non-coding upstream 300775 1917713 ~ 1918020 (-)
trnag-ucc_18 NA other downstream 106000 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 106305 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 448711 1154410 ~ 1154700 (-)
G218265 NA other downstream 469393 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 500527 955480 ~ 1102884 (-)
scaf4b LOC108411133 other upstream 664463 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 995919 2612857 ~ 2629901 (-)
G219642 NA other upstream 1270969 2887907 ~ 2963350 (-)
G219651 NA other upstream 1290388 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 2110439 3727377 ~ 3807114 (-)

Expression


Co-expression Network