LOC117599090


Basic Information

Item Value
gene id LOC117599090
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1123429 ~ 1127973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579531.1
caggattccAGTTCCTATTGAAGGAAACCAAAATGAAGGTCTCGGAGACAATATAAATGATAGGACTGTGATTAACCTGTCTGCCTGTACCTCAACTCCTGCTATGATTCCTGGACTTACTGTGATTCCTGGACTTCCCTTAAAAAGGAAGAACATGCCTATTTTACACACTTGAATCCTGCCTCTTCTAACAgggtgtattcctgcttcatgccCAGCGTTCCTGAcgtagactccggatccaccgacGGCCCTGACCACGATAATGCGGTTACTGAAGAATTACTTTTGCtcaataattttatattaaacttCTCATAGTATTTATGTGCTTAAAAGCAGACATATTCAGACATATTAGGCCTAGGGTGGTTGTAGAGCTGGGTTATGGATTACATTAACACCTCACACAATACAGTAGAATAGGAATCAAATTCACAGAGCCAGAAAGAACTATTCCTGAACCAATGCAGCATTCCAATAAAAATTCAATGTCATCATTTATGAATTATGTTGTATAATTTAAATCCACACTGCACTCACTCACTTTGCATTATACCCTTCAATACACACAAATTGCTTtgttcaaactgctgctctgactatttacacactttatatCTTCAGGAATACTTATTGTGCACAGGGATTGTTGTGTACTGTTTAGTGCATGGATTAGAAATGATTTACTTTTCAGTTTGGTTTGTTCGAAACAGCACACAAATGCAACATACAGGTTAAGACATTATAGCATTTTGACTCAGGAACAATTTAGGGAGATTTTATTCGTGTTTTTGATTATGCCCAATGCAATTTTTTCtccttgtttgttttcattctctGTAGCATTTCTAATTCCAGGTTTACTGTATTGTTTACtgtgtagtttatttattttctctatttatTGAACTCATTGTCTTTGTATTGACTCTGTCACTGTTTCATGTGTGTAACAATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579531.1 True 962 lncRNA 0.37 3 1123429 1127973

Neighbor

gene id symbol gene type direction distance location
LOC117599094 LOC107697487 coding downstream 692 1121082 ~ 1122737 (-)
LOC117599093 NA coding downstream 2042 1119792 ~ 1121387 (-)
LOC113533231 LOC107568747,LOC107697496 coding downstream 3754 1117354 ~ 1119675 (-)
mffa mff coding downstream 246484 863690 ~ 876945 (-)
mrpl44 mrpl44 coding downstream 261834 857338 ~ 861595 (-)
irs1 irs1,LOC107577679 coding upstream 70140 1198113 ~ 1217196 (-)
col4a4 NA coding upstream 106934 1234907 ~ 1290435 (-)
slc8a2b slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 coding upstream 265304 1393277 ~ 1447217 (-)
gmnc gmnc coding upstream 341847 1469820 ~ 1474274 (-)
zgc:162872 LOC108277719 coding upstream 377516 1505489 ~ 1514055 (-)
G218268 NA non-coding downstream 30250 1092791 ~ 1093179 (-)
G218191 fbxo46 non-coding downstream 259984 791773 ~ 863445 (-)
G218208 NA non-coding downstream 275789 847396 ~ 847640 (-)
G218184 NA non-coding downstream 381586 731362 ~ 741843 (-)
G218306 nyap2 non-coding upstream 32740 1160713 ~ 1161109 (-)
G218324 NA non-coding upstream 90258 1218231 ~ 1227815 (-)
G218325 NA non-coding upstream 93180 1221153 ~ 1222614 (-)
G218347 NA non-coding upstream 200165 1328138 ~ 1357336 (-)
G218377 NA non-coding upstream 364427 1492400 ~ 1493405 (-)
mecom LOC108278348,LOC108269179 other downstream 20545 955480 ~ 1102884 (-)
G218214 NA other downstream 244246 878772 ~ 879183 (-)
numbl numbl,LOC107374161 other downstream 376172 712895 ~ 747257 (-)
dpf1 dpf1,LOC107672425,LOC107561370,LOC107749650,LOC107758770 other downstream 438971 635615 ~ 684458 (-)
G218302 nyap2 other upstream 26437 1154410 ~ 1154700 (-)
trnag-ucc_17 NA other upstream 368906 1496879 ~ 1497106 (-)
trnag-ucc_18 NA other upstream 369367 1497340 ~ 1497411 (-)
scaf4b LOC108411133 other upstream 1153428 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1484884 2612857 ~ 2629901 (-)

Expression


Co-expression Network