LOC117599099


Basic Information

Item Value
gene id LOC117599099
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 13658965 ~ 13728334 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579537.1
AAGTGGTCGAAAACTCATTGAAAGAGCTCTGTGAAGCAGTCATCTGATGTGATTTGCTCCCCTCCTTGAGACAAGACCACAGTGGCCAGtttaCCAAACTTTTCAAGTCGTCAATCAAATAAATGACTACTCTGCAATCCGACAGTCAGCAACAGAAGCACGCAGAAGTGTTCATTAGGAAGTTATTACCTGGGAGGGGAGCGGAGGCCTTGTGTGATGAGTGCGCGTTGAGCGCAGCGCTCGAGCAGGTTGACGTCTGCAACACAGTGACACCATGCGTAACAGTAGCATCTCGGAGTATCTTTCTAGAAGAGCCATAGCACGATCATCCCTAAGCTGACGACCTGGAGAGTCTTCTGGAAGTTGAGGGACAGCAGAGATCAGATCCTGGGG

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579537.1 True 393 lncRNA 0.50 3 13658965 13728334

Neighbor

gene id symbol gene type direction distance location
kcnh2a LOC108277613,LOC108440382 coding downstream 52501 13590203 ~ 13606464 (-)
map4l LOC108277464 coding downstream 70756 13571084 ~ 13588209 (-)
ankrd13b ankrd13b,LOC107743633 coding downstream 116750 13518737 ~ 13542215 (-)
nova2 nova2,LOC108277822,LOC108440380,LOC103039352,LOC107669728,LOC107589717,LOC107756760,LOC104927796,LOC100701682,LOC107379798 coding downstream 232098 13379658 ~ 13426867 (-)
gipr LOC108278000 coding downstream 365139 13271957 ~ 13293826 (-)
pgm2l1 pgm2l1,LOC107684026 coding upstream 277674 14006008 ~ 14022045 (-)
spcs2 spcs2,LOC107677086 coding upstream 321931 14050265 ~ 14053122 (-)
rnf169 rnf169 coding upstream 325291 14053625 ~ 14060529 (-)
si:ch1073-280e3.1 cfb coding upstream 640750 14369084 ~ 14382872 (-)
nudt8 nudt8 coding upstream 665399 14393733 ~ 14399348 (-)
G225652 slc6a4,LOC106612651,LOC102787906 non-coding downstream 188942 13469277 ~ 13470023 (-)
G225621 NA non-coding downstream 292474 13364403 ~ 13366491 (-)
G225619 NA non-coding downstream 299944 13358810 ~ 13359021 (-)
G225410 NA non-coding downstream 482973 13068786 ~ 13175992 (-)
G225291 NA non-coding downstream 951590 12706696 ~ 12707375 (-)
G225789 NA non-coding upstream 65898 13794232 ~ 13795138 (-)
G225791 NA non-coding upstream 76735 13805069 ~ 13805447 (-)
G225865 lipt2 non-coding upstream 334887 14063221 ~ 14066038 (-)
G225907 NA non-coding upstream 464437 14192771 ~ 14195082 (-)
G225908 rffl,LOC107561302,LOC107720964,LOC107704306 non-coding upstream 486124 14214458 ~ 14214852 (-)
G225622 NA other downstream 290115 13367763 ~ 13368850 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other downstream 578105 13070136 ~ 13080860 (-)
nf1a nf1 other downstream 651406 12940910 ~ 13007559 (-)
akap1b akap1b,akap1,LOC108278245 other downstream 659934 12920963 ~ 12999031 (-)
bcas3 bcas3,LOC107743646 other downstream 1020240 12435206 ~ 12638725 (-)
or121-1 LOC108277640,LOC108413776 other upstream 212588 13940922 ~ 13942617 (-)
abcg1 abcg1,LOC108277612,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC107677096 other upstream 295911 14024245 ~ 14043774 (-)
zmp:0000001236 maml2 other upstream 759159 14487493 ~ 14536836 (-)
gab2 gab2,LOC107561751,LOC107724943,LOC107593477 other upstream 812143 14540477 ~ 14590536 (-)
foxo1a foxo1 other upstream 1637025 15365359 ~ 15400777 (-)

Expression


Co-expression Network