Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113544520 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 3821225 ~ 3825741 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004579541.1 | True | 513 | lncRNA | 0.43 | 7 | 3821225 | 3825741 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| lsamp | lsamp,LOC106612642,LOC106580806 | coding | downstream | 130730 | 3033027 ~ 3690495 (-) |
| LOC113544469 | NA | coding | downstream | 867241 | 2946753 ~ 2953984 (-) |
| sidt2 | sidt2 | coding | downstream | 939932 | 2863388 ~ 2881293 (-) |
| paf1 | paf1,LOC102790690 | coding | downstream | 989212 | 2824607 ~ 2832013 (-) |
| LOC113544523 | samd4b | coding | downstream | 1009045 | 2799782 ~ 2812180 (-) |
| lrfn1 | lrfn1,LOC108277437,LOC108440319,LOC107733400 | coding | upstream | 95047 | 3920788 ~ 4072868 (-) |
| LOC117599095 | NA | coding | upstream | 433422 | 4259163 ~ 4269047 (-) |
| LOC113544495 | LOC108277689 | coding | upstream | 492250 | 4317991 ~ 4336898 (-) |
| LOC113544498 | clcn2,LOC108411335,LOC103359445 | coding | upstream | 567035 | 4392776 ~ 4460707 (-) |
| chrd | chrd | coding | upstream | 654806 | 4480547 ~ 4491680 (-) |
| G219836 | NA | non-coding | downstream | 232709 | 3588212 ~ 3588516 (-) |
| LOC117599091 | NA | non-coding | downstream | 300738 | 3348363 ~ 3520487 (-) |
| G219697 | NA | non-coding | downstream | 790224 | 3015916 ~ 3031001 (-) |
| G219678 | NA | non-coding | downstream | 829566 | 2970093 ~ 2991659 (-) |
| G219632 | NA | non-coding | downstream | 885156 | 2912680 ~ 2936069 (-) |
| G220278 | NA | non-coding | upstream | 455263 | 4281004 ~ 4325145 (-) |
| G220290 | eif4g1 | non-coding | upstream | 478618 | 4304359 ~ 4305446 (-) |
| G220266 | NA | non-coding | upstream | 489125 | 4314866 ~ 4317621 (-) |
| G220267 | NA | non-coding | upstream | 563531 | 4389272 ~ 4392236 (-) |
| G220359 | NA | non-coding | upstream | 737979 | 4563720 ~ 4564128 (-) |
| LOC113544484 | NA | other | downstream | 4390 | 3740282 ~ 3816835 (-) |
| igsf11 | igsf11 | other | downstream | 14111 | 3727377 ~ 3807114 (-) |
| G219642 | NA | other | downstream | 857875 | 2887907 ~ 2963350 (-) |
| G219651 | NA | other | downstream | 910060 | 2907326 ~ 2911165 (-) |
| gal3st2 | LOC108261785,LOC108277996 | other | downstream | 1191324 | 2612857 ~ 2629901 (-) |
| LOC113544632 | arap1 | other | upstream | 1072209 | 4897950 ~ 4971519 (-) |
| nectin3a | LOC108278241 | other | upstream | 1724678 | 5550419 ~ 5599375 (-) |
| G220990 | NA | other | upstream | 1884357 | 5710098 ~ 5710891 (-) |
| LOC113532612 | LOC108277970 | other | upstream | 1972187 | 5797928 ~ 5803973 (-) |
| dynll2a | dynll2a,LOC107554284 | other | upstream | 2195404 | 6021145 ~ 6024353 (-) |
