Fish Transcriptome and Expression Database

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economic fish

trnae-cuc_27

Basic Information

Item	Value
gene id	trnae-cuc_27
gene name	NA
gene type	coding
species	striped catfish (Pangasianodon hypophthalmus)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	NC_047608.1
NCBI id	CM018554.1
chromosome length	25848897
location	231740 ~ 231811 (-)
genome version	GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnae-cuc_27
tctctggaggactagtggttaggccacagcgctctcactgctgtggcccgggttcgaGTCCCGGCCAgtgaa

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
trnae-cuc_27	True	72	tRNA	0.63	1	231740	231811

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
fkrp	fkrp,LOC107699218,LOC107566082,LOC107752280,LOC107592673	coding	downstream	179563	47324 ~ 52177 (-)
serpine2	serpine2,LOC100304922	coding	downstream	201977	16322 ~ 29763 (-)
scn4ba	scn4b	coding	upstream	100398	332209 ~ 359609 (-)
scn2b	scn2b	coding	upstream	132087	363898 ~ 387663 (-)
zgc:172282	zgc:172282,LOC108277461,LOC108433964,LOC107758157,LOC107697541,LOC107749639,LOC107678250	coding	upstream	163581	395392 ~ 464991 (-)
zgc:114130	LOC108278286	coding	upstream	319204	551015 ~ 553472 (-)
trappc6bl	trappc6bl,LOC108278287,LOC108433979,LOC107678240,LOC107561377,LOC107684201	coding	upstream	335696	567507 ~ 572429 (-)
G218028	NA	non-coding	downstream	16769	214451 ~ 214971 (-)
G217401	NA	non-coding	downstream	158582	69744 ~ 73158 (-)
G218024	NA	non-coding	upstream	20321	252132 ~ 258941 (-)
G218064	NA	non-coding	upstream	149937	381748 ~ 382304 (-)
G218066	NA	non-coding	upstream	156892	388703 ~ 411051 (-)
G218184	NA	non-coding	upstream	499551	731362 ~ 741843 (-)
G218185	NA	non-coding	upstream	499705	731516 ~ 736893 (-)
dpf1	dpf1,LOC107672425,LOC107561370,LOC107749650,LOC107758770	other	upstream	403804	635615 ~ 684458 (-)
numbl	numbl,LOC107374161	other	upstream	481084	712895 ~ 747257 (-)
G218214	NA	other	upstream	646961	878772 ~ 879183 (-)
mecom	LOC108278348,LOC108269179	other	upstream	723669	955480 ~ 1102884 (-)
G218265	NA	other	upstream	848477	1080288 ~ 1134018 (-)

Expression

Co-expression Network