trnag-ucc_16


Basic Information

Item Value
gene id trnag-ucc_16
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1495762 ~ 1495833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnag-ucc_16
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTtgacccgggttcgattcccggccaacGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnag-ucc_16 True 72 tRNA 0.58 1 1495762 1495833

Neighbor

gene id symbol gene type direction distance location
gmnc gmnc coding downstream 21488 1469820 ~ 1474274 (-)
slc8a2b slc8a2b,LOC108277508,LOC108433971,LOC107725154,LOC107670115,LOC107585757,LOC107558827 coding downstream 48545 1393277 ~ 1447217 (-)
col4a4 NA coding downstream 205327 1234907 ~ 1290435 (-)
irs1 irs1,LOC107577679 coding downstream 278566 1198113 ~ 1217196 (-)
LOC117599094 LOC107697487 coding downstream 373025 1121082 ~ 1122737 (-)
zgc:162872 LOC108277719 coding upstream 9656 1505489 ~ 1514055 (-)
ilkap ilkap,LOC107725757,LOC107756217 coding upstream 19140 1514973 ~ 1519815 (-)
LOC113544537 dgkd coding upstream 25494 1521327 ~ 1540722 (-)
sagb LOC108411842,LOC107756220,LOC107670108,LOC107689591,LOC107600819 coding upstream 51110 1546943 ~ 1558304 (-)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding upstream 64736 1560569 ~ 1581029 (-)
G218377 NA non-coding downstream 2357 1492400 ~ 1493405 (-)
G218347 NA non-coding downstream 138426 1328138 ~ 1357336 (-)
G218324 NA non-coding downstream 267947 1218231 ~ 1227815 (-)
G218325 NA non-coding downstream 273148 1221153 ~ 1222614 (-)
G218306 nyap2 non-coding downstream 334653 1160713 ~ 1161109 (-)
LOC113544681 NA non-coding upstream 50612 1546445 ~ 1568191 (-)
G218695 NA non-coding upstream 81048 1576881 ~ 1577211 (-)
LOC117599072 NA non-coding upstream 107578 1603411 ~ 1616938 (-)
G218720 NA non-coding upstream 128651 1624484 ~ 1682087 (-)
G218734 NA non-coding upstream 179931 1675764 ~ 1676214 (-)
G218302 nyap2 other downstream 341062 1154410 ~ 1154700 (-)
G218265 NA other downstream 361744 1080288 ~ 1134018 (-)
mecom LOC108278348,LOC108269179 other downstream 392878 955480 ~ 1102884 (-)
G218214 NA other downstream 616579 878772 ~ 879183 (-)
numbl numbl,LOC107374161 other downstream 748505 712895 ~ 747257 (-)
trnag-ucc_17 NA other upstream 1046 1496879 ~ 1497106 (-)
trnag-ucc_18 NA other upstream 1507 1497340 ~ 1497411 (-)
scaf4b LOC108411133 other upstream 785568 2281401 ~ 2320915 (-)
gal3st2 LOC108261785,LOC108277996 other upstream 1117024 2612857 ~ 2629901 (-)
G219642 NA other upstream 1392074 2887907 ~ 2963350 (-)

Expression


Co-expression Network