trnap-cgg_8


Basic Information

Item Value
gene id trnap-cgg_8
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7195523 ~ 7195594 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-cgg_8
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-cgg_8 True 72 tRNA 0.63 1 7195523 7195594

Neighbor

gene id symbol gene type direction distance location
thap12b thap12,LOC108278397 coding downstream 315 7187800 ~ 7195208 (-)
map6b LOC108277516 coding downstream 9259 7174352 ~ 7186264 (-)
zgc:112083 LOC108278169,LOC108435289,LOC107726099,LOC107662779 coding downstream 22775 7163957 ~ 7172748 (-)
phldb1b phldb1,LOC108277892 coding downstream 155663 6959123 ~ 7039860 (-)
atf5b LOC108278369,LOC108435284,LOC103039462 coding downstream 259454 6931522 ~ 6936069 (-)
dyrk1ab dyrk1a,LOC108278223,LOC108435291,LOC107726100,LOC107662773 coding upstream 3237 7198831 ~ 7225546 (-)
alcamb LOC108278292 coding upstream 34324 7229918 ~ 7253606 (-)
LOC113532980 LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794 coding upstream 80854 7276448 ~ 7283973 (-)
LOC113532840 LOC108277937 coding upstream 159586 7355180 ~ 7365143 (-)
lim2.3 lim2.3,LOC108277938,LOC108435296,LOC103047043,LOC107748598,LOC107699889,LOC107597599 coding upstream 176820 7372414 ~ 7376065 (-)
G221814 NA non-coding downstream 17227 7133517 ~ 7178296 (-)
G221812 NA non-coding downstream 71321 7122717 ~ 7124202 (-)
G221683 colca2 non-coding downstream 322164 6872831 ~ 6873359 (-)
G221682 colca2 non-coding downstream 323544 6871737 ~ 6871979 (-)
G221681 NA non-coding downstream 325249 6867784 ~ 6870274 (-)
G221844 NA non-coding upstream 23072 7218666 ~ 7220929 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding upstream 175776 7371370 ~ 7372320 (-)
LOC113532601 NA non-coding upstream 380960 7576554 ~ 7577056 (-)
G222367 NA non-coding upstream 936769 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 967039 8162633 ~ 8162848 (-)
LOC113532805 NA other downstream 542105 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1171170 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1391550 5797928 ~ 5803973 (-)
G220990 NA other downstream 1484632 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1596148 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 196821 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1209235 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1745424 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2481665 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3112456 10308050 ~ 10312516 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnap-cgg-219 NA coding NW_023493868.1 JAAXML020000511.1 9203 ~ 9274 (-)
eurasian perch (Perca fluviatilis) trnap-cgg_6 NA coding NW_024375680.1 VHII01000050.1 9494 ~ 9565 (+)
tiger barb (Puntius tetrazona) trnaf-gaa_64 NA misc NC_056709.1 CM032078.1 2929193 ~ 2929270 (-)
tiger barb (Puntius tetrazona) trnap-cgg_29 NA coding NC_056713.1 CM032082.1 11820561 ~ 11820632 (+)
mexican tetra (Astyanax mexicanus) trnap-cgg_41 NA coding NW_019172892.1 APWO02000086.1 2756 ~ 2827 (+)