trnaw-cca_13


Basic Information

Item Value
gene id trnaw-cca_13
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 2683406 ~ 2683477 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaw-cca_13
GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaw-cca_13 True 72 tRNA 0.58 1 2683406 2683477

Neighbor

gene id symbol gene type direction distance location
trnag-ucc_24 NA coding downstream 4241 2679094 ~ 2679165 (-)
efhd1 LOC108277857 coding downstream 6282 2669450 ~ 2677124 (-)
fat3a fat3,fat3a coding downstream 156647 2407619 ~ 2526759 (-)
mtnr1ba LOC108277522,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding downstream 288759 2374789 ~ 2394647 (-)
sgpp2 LOC108277997 coding downstream 405689 2270106 ~ 2277717 (-)
zmp:0000000529 LOC108277854,LOC107663551,LOC107572208,LOC107679443,LOC107557657,LOC108443019 coding upstream 3070 2686547 ~ 2697524 (-)
LOC113544616 LOC108277853,LOC108443018 coding upstream 14917 2698394 ~ 2741147 (-)
psma6l psa6,LOC100701743,LOC102789735,LOC103033229,LOC105026880,LOC101155046,LOC106580837 coding upstream 88965 2772442 ~ 2778203 (-)
LOC113544504 NA coding upstream 104295 2787772 ~ 2794518 (-)
LOC113544523 samd4b coding upstream 116305 2799782 ~ 2812180 (-)
G219576 NA non-coding downstream 71245 2611394 ~ 2612161 (-)
G218917 NA non-coding downstream 263915 2336752 ~ 2419491 (-)
G218972 NA non-coding downstream 402627 2280253 ~ 2280779 (-)
G218950 farsb non-coding downstream 416678 2227495 ~ 2266728 (-)
G218850 NA non-coding downstream 702499 1978042 ~ 1980907 (-)
G219593 NA non-coding upstream 1612 2685089 ~ 2685930 (-)
G219609 NA non-coding upstream 114716 2798193 ~ 2798951 (-)
LOC113544648 NA non-coding upstream 149223 2832700 ~ 2839242 (-)
G219632 NA non-coding upstream 229203 2912680 ~ 2936069 (-)
G219678 NA non-coding upstream 286616 2970093 ~ 2991659 (-)
gal3st2 LOC108261785,LOC108277996 other downstream 53505 2612857 ~ 2629901 (-)
scaf4b LOC108411133 other downstream 362491 2281401 ~ 2320915 (-)
trnag-ucc_18 NA other downstream 1185995 1497340 ~ 1497411 (-)
trnag-ucc_17 NA other downstream 1186300 1496879 ~ 1497106 (-)
G218302 nyap2 other downstream 1528706 1154410 ~ 1154700 (-)
G219642 NA other upstream 204430 2887907 ~ 2963350 (-)
G219651 NA other upstream 223849 2907326 ~ 2911165 (-)
igsf11 igsf11 other upstream 1043900 3727377 ~ 3807114 (-)
LOC113544484 NA other upstream 1056805 3740282 ~ 3816835 (-)
LOC113544632 arap1 other upstream 2214473 4897950 ~ 4971519 (-)

Expression


Co-expression Network