G251424


Basic Information

Item Value
gene id G251424
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 8509434 ~ 8509647 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU297579
GACAATTtcgcttcactggaactaagcggTTGAGCCCAAACATTCCAGCAttacaatgcctctgtgcacaaagcgagctctgTGAAGACATGATGTGGCCGAGGCTGATGTGGAAGAAGttaagtggcctgcacagagctctgacctcaaccccactgaacacctttaggatgcaCTAGAATGCTGACTGCGCCCCAAGCCTCCTTGTCTGACG

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU297579 True 214 lncRNA 0.52 1 8509434 8509647

Neighbor

gene id symbol gene type direction distance location
plekhm2 plekhm2 coding upstream 258 8493582 ~ 8509176 (+)
ddost ddost,LOC107673085,LOC107687429 coding upstream 18627 8483668 ~ 8490807 (+)
zbtb17 zbtb17 coding upstream 27283 8471131 ~ 8482151 (+)
hspb7 hspb7,LOC107591086,LOC107716085,LOC107578967 coding upstream 40210 8466737 ~ 8469224 (+)
epha2b epha2,epha2b,LOC107591085,LOC107737541,LOC107687430,LOC107673100,LOC107716125,LOC107593930 coding upstream 86464 8402069 ~ 8422970 (+)
ano11 ano7l1,LOC107737547,LOC107716119,LOC107591089,LOC107593934 coding downstream 3493 8513140 ~ 8531671 (+)
arhgef19 arhgef19,LOC103150465,LOC106926263 coding downstream 23485 8533132 ~ 8552393 (+)
her9 hes4,her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146 coding downstream 447747 8957394 ~ 8959195 (+)
perm1 NA coding downstream 497095 9006742 ~ 9021145 (+)
noc2l noc2l coding downstream 559058 9068705 ~ 9107223 (+)
G251418 NA non-coding upstream 25877 8483292 ~ 8483557 (+)
G251417 NA non-coding upstream 26213 8482988 ~ 8483221 (+)
G251400 NA non-coding upstream 47625 8403341 ~ 8461809 (+)
G251381 NA non-coding upstream 202519 8306461 ~ 8306915 (+)
G251146 LOC108276122,LOC108433859 non-coding upstream 407317 8101286 ~ 8102117 (+)
LOC117599296 NA non-coding downstream 88090 8597737 ~ 8600118 (+)
G251463 NA non-coding downstream 120288 8629935 ~ 8633785 (+)
G251462 NA non-coding downstream 141954 8651601 ~ 8672239 (+)
G251747 NA non-coding downstream 529548 9039195 ~ 9039398 (+)
G251760 NA non-coding downstream 564709 9074356 ~ 9074629 (+)
fam131c fam131c other upstream 63829 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 127251 8352779 ~ 8382183 (+)
atp13a2 atp13a2,LOC107593939 other upstream 171368 8312773 ~ 8338066 (+)
htr6 htr6,LOC107738420,LOC107558748,LOC107664185,LOC107754887 other upstream 253286 8253674 ~ 8256148 (+)
micos10 minos1,LOC107738265,LOC107590465,LOC107558746,LOC107664137 other upstream 257182 8248320 ~ 8252252 (+)
LOC113530359 rnf223 other downstream 111335 8620982 ~ 8627025 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other downstream 1761156 10270803 ~ 10342428 (+)
si:dkey-32e6.3 LOC108276471 other downstream 2263024 10772671 ~ 10779860 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 2333964 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 2362382 10872029 ~ 10913596 (+)

Expression


Co-expression Network