LOC113530359 (rnf223)


Basic Information

Item Value
gene id LOC113530359
gene name rnf223
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 8620982 ~ 8627025 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU297603
TGAGGAAAGTAAGGGCAGGTGAGAGTGGAGATGAGGCAGTCACCATGCAGCGAGAGGGCAGTGCACTTCTGTTCCACCTGTAGCACCACTGACTCCAGACTTGAGAATGCGAACACTCTCTAGAAGCAACTAAGGAAAGTAAAAACAAGACGGGAACACAAACAGactTGTTCTGCGTACTTTGCTGAAGCTGCTCAGCTGGTCGAGCGTACACCGTTACAGGATCTCGCCGTTCTGCACGTACACAGGACCATAAATCTAAGccaATCAGACATAAGGGAGGTGTGAATGATAGGATGTACCTGTAAGATGGACATGGGAGCGACTGTGTGGCACACCCAGATGACAGTGGATGCTGACGTGGAGAAAGGTCCTGAGCTGCAGTGCTCCATCTGCTTCACCATGTATGACAATATCTTCAAAACGCCCAAACAGCTGGATTGCACGCATACGTTCTGTCTGGAGTGCCTCTCACGCCTCGTGGCCATCTCCATGGCCCCTCAGGAGAGTAAAATCTCATGTCCCTTCTGCCGACACCTTACGGCCATCCCTAAAAACGGCCCGCCGGCTCTGACCACCAGTCGCGAGGTTCTGTGTCGTCTTCCCAGGCACCAGCAGAATGAGGAGCCCGTGTGGCTCGAGGGGGACAAGCTGTGCTACAAGCGGCCCCTTAAGACAGGCATGCCAGCTTTCTGCATCTGCATTGACATTGGTGCCAGTGGGCATGGTGCAGGAGCTCCACCTCAGACGGGGTTCAGGGCGAGCCTGTTGGAAAGACTCACTAACTGGAAGAAGCTTCTGCTGTTTATTGTAATCatggtgctggtggtggtgatTGTGTTGTGGCCGCTGCAGTGTATCATCACCACGGGATCGATGCGGTGCGTGCCTCGCACCCCACAGCCCAACACCAGCACCACTGCTCCGCGCACAATGAGACACCC
>XM_026920259.2
ATCAGTGTCATTTCGACAGGGCGTGAGGAAAGTAAGGGCAGGTGAGAGTGGAGATGAGGCAGTCACCATGCAGCGAGAGGGCAGTGCACTTCTGTTCCACCTGTAGCACCACTGACTCCAGACTTGAGAATGCGAACACTCTCTAGAAGCAACTAAGGAAAGTAAAAACAAGACGGGAACACAAACAGactTGTTCTGCGTACTTTGCTGAAGCTGCTCAGCTGGTCGAGCGTACACCGTTACAGGATCTCGCCGTTCTGCACGTACACAGGACCATAAATCTAAGccaATCAGACATAAGGGAGGTGTGAATGATAGGATGTACCTGTAAGATGGACATGGGAGCGACTGTGTGGCACACCCAGATGACAGTGGATGCTGACGTGGAGAAAGGTCCTGAGCTGCAGTGCTCCATCTGCTTCACCATGTATGACAATATCTTCAAAACGCCCAAACAGCTGGATTGCACGCATACGTTCTGTCTGGAGTGCCTCTCACGCCTCGTGGCCATCTCCATGGCCCCTCAGGAGAGTAAAATCTCATGTCCCTTCTGCCGACACCTTACGGCCATCCCTAAAAACGGCCCGCCGGCTCTGACCACCAGTCGCGAGGTTCTGTGTCGTCTTCCCAGGCACCAGCAGAATGAGGAGCCCGTGTGGCTCGAGGGGGACAAGCTGTGCTACAAGCGGCCCCTTAAGACAGGCATGCCAGCTTTCTGCATCTGCATTGACATTGGTGCCAGTGGGCATGGTGCAGGAGCTCCACCTCAGACGGGGTTCAGGGCGAGCCTGTTGGAAAGACTCACTAACTGGAAGAAGCTTCTGCTGTTTATTGTAATCatggtgctggtggtggtgatTGTGTTGTGGCCGCTGCAGTGTATCATCACCACGGGATCGATGCGGTGCGTGCCTCGCACCCCACAGCCCAACACCAGCACCACTGCTCCGCGCACAATGAGACACCCATAACTGACGCACAAACAAACTGTTGATCTCACCCTCCTGAGAACTGTACACTCAGCGATGATGGGCAagacacaaaataaacattattattattattattagaaactGAGAGTGGGCTTGAAGCCTGAGTCCAAAAACATCTGTGTGACATCGAATCAGAGACTCATTAGTGTTCTTTTTAGCTGAAAACACTGTCGTATATGCTGgccattcattcagtcattttcatcagccactttatcttggtcaggatTGTGGTGGATCCTGAGCCTATTCCTGGAACACTGAACACGACGTGGGAATACTGGATGGTATGCTAGTCCATtgccagcaccacacacacacacacacacacacacacacctaggggcaatttagcatcaCCCATCCACCTACTGTGCTGTTTTGGGAGGTAGGAAGACATCAGAGAACCAAGAGGAAACCCAGACAGGCACAGGCACAACATgaaacactccacacagacagtaacccgagctcaggatcaaaccctggagcCGTGAAGCGGCGACACTTCCTGCTGCGCCGCTGTATGCCTAGTGTAACGCAAATATCTTCATCATAATCAGGAGAAAATCACTGGTTAAATATTTGATTGGTATTAGTTTTCTGAGACCCGTGTTCATCTGCAGAAAGCACGAGGCTGGAGTCGGATATTATAGGACTAATGAGGTGATGAGAGGTAGGAACCTGTGGAAAGGCACTAGACTTGAACAGACGAGACTAATGTGATATAAACACATCTAATACAATGTTCATCTTCAGCACTTTCTAATAGTATTAGCATTTCTCCATGTCTAAATCATAATCTGTGATTTTAGAAATGAAGTTTTTTCCAGATCCAAtctcagaggttttttttaatctgatattaaaaaaattagaaacgGTTGATCTCAGAACAGTATTCAAAGTGGTTTTTTGCAGTGGATATGAGACAGCTCATACCAAAATCCATTAAAAGGTTATATTAACTTTTTAATAACTGCACTACAAATATCCTTCTGCAGTTTTTCATATATACACTAACATTTCTATAGctgtgtataattttatatgcATTGTATATGGTGTATTTGATCACACTGTATTATGGACTACATATTTTTGGTTTACAAAAGAGTAAATGCTGACTAAACACCAA

Function

symbol description
rnf223 Predicted to enable metal ion binding activity. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297603 False 944 TUCP 0.54 3 8621005 8625862
XM_026920259.2 True 2130 mRNA 0.46 3 8620982 8627025

Neighbor

gene id symbol gene type direction distance location
arhgef19 arhgef19,LOC103150465,LOC106926263 coding upstream 68589 8533132 ~ 8552393 (+)
ano11 ano7l1,LOC107737547,LOC107716119,LOC107591089,LOC107593934 coding upstream 89311 8513140 ~ 8531671 (+)
plekhm2 plekhm2 coding upstream 111806 8493582 ~ 8509176 (+)
ddost ddost,LOC107673085,LOC107687429 coding upstream 130175 8483668 ~ 8490807 (+)
zbtb17 zbtb17 coding upstream 138831 8471131 ~ 8482151 (+)
her9 hes4,her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146 coding downstream 330369 8957394 ~ 8959195 (+)
perm1 NA coding downstream 379717 9006742 ~ 9021145 (+)
noc2l noc2l coding downstream 441680 9068705 ~ 9107223 (+)
ca6 ca6 coding downstream 784448 9411473 ~ 9417779 (+)
spsb1 spsb1,LOC103042472,LOC107716103,LOC107703063,LOC107687410,LOC107591103 coding downstream 843047 9470072 ~ 9489862 (+)
LOC117599296 NA non-coding upstream 20864 8597737 ~ 8600118 (+)
G251424 NA non-coding upstream 111335 8509434 ~ 8509647 (+)
G251418 NA non-coding upstream 137425 8483292 ~ 8483557 (+)
G251417 NA non-coding upstream 137761 8482988 ~ 8483221 (+)
G251400 NA non-coding upstream 159173 8403341 ~ 8461809 (+)
G251463 NA non-coding downstream 2910 8629935 ~ 8633785 (+)
G251462 NA non-coding downstream 24576 8651601 ~ 8672239 (+)
G251747 NA non-coding downstream 412170 9039195 ~ 9039398 (+)
G251760 NA non-coding downstream 447331 9074356 ~ 9074629 (+)
G251783 NA non-coding downstream 503926 9130951 ~ 9223205 (+)
fam131c fam131c other upstream 175377 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 238799 8352779 ~ 8382183 (+)
atp13a2 atp13a2,LOC107593939 other upstream 282916 8312773 ~ 8338066 (+)
htr6 htr6,LOC107738420,LOC107558748,LOC107664185,LOC107754887 other upstream 364834 8253674 ~ 8256148 (+)
micos10 minos1,LOC107738265,LOC107590465,LOC107558746,LOC107664137 other upstream 368730 8248320 ~ 8252252 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other downstream 1643778 10270803 ~ 10342428 (+)
si:dkey-32e6.3 LOC108276471 other downstream 2145646 10772671 ~ 10779860 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 2216586 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 2245004 10872029 ~ 10913596 (+)
oard1 oard1 other downstream 2604353 11231378 ~ 11237367 (+)

Expression


Co-expression Network