G251783


Basic Information

Item Value
gene id G251783
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9130951 ~ 9223205 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU298010
aaaaaaaaaaaaaaaaaaaaaaaaaaaaacctgacatcTTCTACAACAGCACTGATTATCAAGTATTATTCCAAatctgaaacacaaaaatacCTTCTGGCATTGAGAGCATCAGTGAACATAAAATGAccatgatgagtgtgtgagacacaaAAAGAGTGAAATACTGCATGTAACAGTGGACGATGGCTATCACACGGCCCATGGATCACGCTTCATGGGAAGTGCAGTGTCAGGAATGCAGAGAGAAGCTGCAGTGGTAATATGTTCTTCTCCACTActacaaacatgcacacacaaaacacacatattcTTGTTCAAAGCTCTTAAATCCATCTTTTATGGAGAACCATGTCTTTCGAGTATCACAGTGAGGTTGACTGAGTGAGGAGCCTCACACCTGGAGGCAGAGCGACTTGAGTAGTGGAGGTGGGGGAACTGCACTGCCGTTAGCACCCAACAACTGGTTTAAAATCACTAAAAGCATTCATGAAAAgcgttgaaaaaaaaaaatatatcaggcCATTCCCATCATTGTGAGACGACAGAAATACCTGAATCAATAAGTACGTTCAGAAGTTGCATGAAAACTTAATTCAGCTTTATAAAACCAATTTCGTCACTTTGGTGCACAGAACTAAGACgtttttaaaatgcactcaTTCACATTGTCAGTTCACTTAAAACCAATTAGAATCGAACCTTTCATATTCTGATGTTATTCAGTGCAATTTTTGTAATCCCTCGTGCACAGCCTTGGAGCCATCACACTTGGAGGAAATGAAGATGGTAATGACATCATGAATGGGTCTGTACGTGTATCTGTGGCTGACAGTCTATAGGatgaaaagcagctcaactTGAGCATTCACCTTAGgtgtgtgtggatagaaatCTGGTACAACCATTTCTCTGCGACCCTGTTTTATGGACCGCAACCACGCGACATGGCTACTTACTCAAATAATGCCATCTCATTCCCCTCTGAAACAAGGGATGATGCTTCAGAACTATTATACTGGAGGTCTACAAATCGGTCAGGAATCCacacctaataataataataattataataatcatatgtatatatatttatatatactattTACAGACTCAAAAAAAATGCCATGCTGCAgcttttcttaaaattaaaaacctcctacaatgtattaaaataaacattgaatTTAAGATAGCACTTTTCATATATAATGGCCgacttcttttccttttttttttttttttttttttgaataagcACAGTGACAAAGTGTCTGGTATTCTAGCACCTACAAAAATGTCAGGGAAGCTTCTCAGAGGATGTTCATGCAGGAAAGTCACAATCAGTCTTGAGGACGTTGTCACTACTCGAACGCTATATACCAAAAAATGAATTCAACTtcttgagaaaataaaaaaaagtccataaGAGTAAAGAAAACCGACAACAGAACAAAAACTTAACAGATTATCCTTGTCACTTTTcggtttttaaaaatgtcccaAGGGCACGCAAGTTCCTGTCCGACTGTTCTGGTGCGACCTCCTGTGTCCTGCTGATCTCTGTGATATCACATCCCTCTAAACAATCACAGCTGCTTATCACTCTCCTTCTTTAACCGGCTGTGGGGATGAGAAGACAAAACAGCACCAGTCAAACACATGCGTTACACACAATGCCCATATATATTAAAGTCAGTAAATGGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298010 True 1708 lncRNA 0.38 2 9130951 9223205

Neighbor

gene id symbol gene type direction distance location
noc2l noc2l coding upstream 23728 9068705 ~ 9107223 (+)
perm1 NA coding upstream 109806 9006742 ~ 9021145 (+)
her9 hes4,her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146 coding upstream 171756 8957394 ~ 8959195 (+)
arhgef19 arhgef19,LOC103150465,LOC106926263 coding upstream 578558 8533132 ~ 8552393 (+)
ano11 ano7l1,LOC107737547,LOC107716119,LOC107591089,LOC107593934 coding upstream 599280 8513140 ~ 8531671 (+)
ca6 ca6 coding downstream 188268 9411473 ~ 9417779 (+)
spsb1 spsb1,LOC103042472,LOC107716103,LOC107703063,LOC107687410,LOC107591103 coding downstream 246867 9470072 ~ 9489862 (+)
phc2a phc2,LOC108434472 coding downstream 456397 9679602 ~ 9728769 (+)
ephb2a LOC108275960,LOC108434494 coding downstream 568573 9791778 ~ 9847969 (+)
lrrc38a LOC108275654,LOC108432618,LOC107737569,LOC107703049,LOC107712669,LOC107591108 coding downstream 633168 9856373 ~ 9867077 (+)
G251760 NA non-coding upstream 56322 9074356 ~ 9074629 (+)
G251747 NA non-coding upstream 91553 9039195 ~ 9039398 (+)
G251462 NA non-coding upstream 458712 8651601 ~ 8672239 (+)
G251463 NA non-coding upstream 497166 8629935 ~ 8633785 (+)
LOC117599296 NA non-coding upstream 530833 8597737 ~ 8600118 (+)
G251801 NA non-coding downstream 10008 9233213 ~ 9238533 (+)
G251803 NA non-coding downstream 20109 9243314 ~ 9249263 (+)
G251799 LOC108231175 non-coding downstream 135057 9358262 ~ 9401392 (+)
G251800 NA non-coding downstream 180646 9403851 ~ 9406388 (+)
LOC117599255 NA non-coding downstream 183302 9406507 ~ 9407698 (+)
LOC113530359 rnf223 other upstream 503926 8620982 ~ 8627025 (+)
fam131c fam131c other upstream 685346 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 748768 8352779 ~ 8382183 (+)
atp13a2 atp13a2,LOC107593939 other upstream 792885 8312773 ~ 8338066 (+)
htr6 htr6,LOC107738420,LOC107558748,LOC107664185,LOC107754887 other upstream 874803 8253674 ~ 8256148 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other downstream 1047598 10270803 ~ 10342428 (+)
si:dkey-32e6.3 LOC108276471 other downstream 1549466 10772671 ~ 10779860 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 1620406 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 1648824 10872029 ~ 10913596 (+)
oard1 oard1 other downstream 2008173 11231378 ~ 11237367 (+)

Expression


Co-expression Network