G251799 (LOC108231175)


Basic Information

Item Value
gene id G251799
gene name LOC108231175
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9358262 ~ 9401392 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU298026
TCTGATTCACACCATATGCGAGTTGATCAAAACATGCCGCTGTTTGCTGATAAATGTCTAAGGGAGGCAGTAAGGTCGTCCCCTGTCTTTgtctcctttctgtctctctttctttctcagcagCGCAGGCTGGGGCAGGAGAGTAAACACAGATGCTGAGCAGCAAACTGAAGGACAGCCTTTTTATCAGCTATGACAGCCCTGGCTGCTGTAAGAATCAAACAAACAGTGCAAGCAAGTGTGTCACTTTAATAAAGTGCCAGAGTTAGAAACTAGgtaagaaagacagacacagagacacagataagaggagagagagAACAGCACCAAAATCATATCTAGTTTATGTGGAATCATTAGACAAAGTAGTTGGTCATTAGAACAAATACCATCAGATAATCAGGGTCAGGAGGATGCAGAGTGCTTTTACTTGAAAGCAAAACACatgcagtgtatatacagtgtaagcCAGTGAATAGCCCAGGCTGTAGAGTGCttcagatagtggcattgctcTGGAATGACAGCAGAGGTCAGTACAGACCTCTACAGCAGTCCCTGCACAGTGTATTTCTCAAGCTACCCTTGGTTTTGCAAGCTTAACACTGGTCATTGTGAAACATTTTGCAACAAATACCAGAAGTAAAAGACAGAACTGAGAATAGAAATGTTCAGTTGTTAATTGGTTcttacaatataaataaaatacaaggtCCTAAGCACAAGAGTATAAAGGAGTCATAAGGATCAGATGCCATGCTGGTGTtgctgtgctgtctgggtgtCTTGTTACTTGTTTCTCATGCATCACTGCTTCAGTCAGGAGGACATCTCTTATTACCAGACCCGCACCTAGGAGGATGTTGGGGGCGAAGCCACCTTCGTCTCCCACATTGGTGGCGTCTTTGCCGTATTTCTCCTTGATGACGTTCTTCAGGTTGTGGTAGACCTCAGCACCGATGCGCATGGCCTCTTTGAAGTTGCTTGCTCCAACAGGGAGGATCATGAACTCCTGCATGGCCAGCTTGTTGCCAGCGTGGGAGCCCCGTTGATAACGTTGAAGGCCTTGGGAATAGGCACTGGGAGGATGACCTCTGGATTTCCAGCAAGGTCAGCGATGTGGCGGTAGAGTGGGACGCCCTTCTCTGCAGCACCAGCCTTGCACACAGCCAGGGACACACCCAGGATGGCATTTGCACCAAATTTAGTTTGTTATCTGTACCATCCATATCAAGCATCAGCTTGTCAATCTTCTCCTGCTCCAAAACAGACACATCTACCTGGCTAACCAGGGCAGGTGCAATTGTTTTATTGATATGCTCAACAGCTTTAGAGACACCTGCAAGGAACAagcagaccatcactgacccgaGTGGAGGGGAACATGCAGAGTTGGCACGGTTAGACATTAGATCACAGGCCCCGAAGTTCTCCCCAATTATTTATTAGCATTCAGGTGAGGGAGCTTTAGCACACGTAGGAGAGTTTCAAATGTTTCTCAGGACTTCTGTGATCATCTGTTAGTTGCAAAAACAAACTCATGCTCTGGTACACACGGCTGAGATGACCCTTACTTCAGTTACggcacacactcatttaccTGGTTACATAAAGCTGGGGCCAAGaactcatttacatattttacagctCTTTTCACCCCTGAcagaggagaaggaaagtgTCAAAACAGGCAagatggaaaaacaaagaaataggCAGAGTACACAGTGACAGATCTACATTACTGAAGACCTGGAAGAACctattacagtaaataaatgatgGTTGGGTGGCTGAGGTGAAGCAGCCTACAATTATAAGCATATAAGCACAGTGCCAAACATTAGGCATTAATTAGGCAATAATTAATTGAAGGAAAGTAGTTTGTAGAAGAAAATTCTGCACCGATAGTCTATAAAGTTTGGTGGAaacatacatttaaatgtttagaCTCATGGTTTGGTCTGGGGACCCTCCAGGGGTAATAAGGATTTGTACAAGTTCTATGGGtggaaaatagaaataaaaaaaacatctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298026 True 2039 lncRNA 0.44 6 9358262 9401392

Neighbor

gene id symbol gene type direction distance location
noc2l noc2l coding upstream 251039 9068705 ~ 9107223 (+)
perm1 NA coding upstream 337117 9006742 ~ 9021145 (+)
her9 hes4,her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146 coding upstream 399067 8957394 ~ 8959195 (+)
arhgef19 arhgef19,LOC103150465,LOC106926263 coding upstream 805869 8533132 ~ 8552393 (+)
ano11 ano7l1,LOC107737547,LOC107716119,LOC107591089,LOC107593934 coding upstream 826591 8513140 ~ 8531671 (+)
ca6 ca6 coding downstream 10081 9411473 ~ 9417779 (+)
spsb1 spsb1,LOC103042472,LOC107716103,LOC107703063,LOC107687410,LOC107591103 coding downstream 68680 9470072 ~ 9489862 (+)
phc2a phc2,LOC108434472 coding downstream 278210 9679602 ~ 9728769 (+)
ephb2a LOC108275960,LOC108434494 coding downstream 390386 9791778 ~ 9847969 (+)
lrrc38a LOC108275654,LOC108432618,LOC107737569,LOC107703049,LOC107712669,LOC107591108 coding downstream 454981 9856373 ~ 9867077 (+)
G251803 NA non-coding upstream 108999 9243314 ~ 9249263 (+)
G251801 NA non-coding upstream 119729 9233213 ~ 9238533 (+)
G251782 NA non-coding upstream 126345 9220942 ~ 9231917 (+)
G251783 NA non-coding upstream 135057 9130951 ~ 9223205 (+)
G251760 NA non-coding upstream 283633 9074356 ~ 9074629 (+)
G251800 NA non-coding downstream 2459 9403851 ~ 9406388 (+)
LOC117599255 NA non-coding downstream 5115 9406507 ~ 9407698 (+)
G251921 NA non-coding downstream 37168 9438560 ~ 9438796 (+)
G251988 NA non-coding downstream 140737 9542129 ~ 9543640 (+)
G252102 LOC108276488 non-coding downstream 253490 9654882 ~ 9656393 (+)
LOC113530359 rnf223 other upstream 731237 8620982 ~ 8627025 (+)
fam131c fam131c other upstream 912657 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 976079 8352779 ~ 8382183 (+)
atp13a2 atp13a2,LOC107593939 other upstream 1020196 8312773 ~ 8338066 (+)
htr6 htr6,LOC107738420,LOC107558748,LOC107664185,LOC107754887 other upstream 1102114 8253674 ~ 8256148 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other downstream 869411 10270803 ~ 10342428 (+)
si:dkey-32e6.3 LOC108276471 other downstream 1371279 10772671 ~ 10779860 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 1442219 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 1470637 10872029 ~ 10913596 (+)
oard1 oard1 other downstream 1829986 11231378 ~ 11237367 (+)

Expression


Co-expression Network