LOC117599234 (LOC108275963)


Basic Information

Item Value
gene id LOC117599234
gene name LOC108275963
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9768247 ~ 9771563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU298530
CACAGGGTGGAGATGACAAAGGGCTGTAATTATCTTTGAAGTTGTGTTTTAAAAGGAACAGCAGAGGCACGGGATACAAGAACGTCAGAAGACAGTACATATAGCCCAGGGTTCAGCTGAAGATGAAGGTCTTGCCAGTCGTTCTACTGATTTTGGCCTTTGGCCTAATCTCAGATGCTGTGATTGTTCATgaaGGAgaattttctttctcactcGAATCAGTAAAAAAGGTTTGGGACATCCTGGCTAATGAAGAGTCAACCAAACAGACCAATCCCTTAAGCGTGTTCAGCGCTGTGACAGTGTGTGAAAACCCACTCCTTCCTGAGGAATTTCAGCCTCTGTGCCAAAGCAAAAATGCACAATTTCATTTCTCCAGACTTGCACTTCTCTCCGGGAAAAAGGATGTATGTGAGATCTGTGCATTTGCTGCTTGCACTGGTTGCTGAACATGACTCAGCATTATACTGATACTTCAAGATCTAAAATCTTACTCTTTTTAAATTccacttatttttattagtttgacAAATTCATTATGCATACTTGTATGTaatctgtctctgtgttgtAATCATTTTTATCTCCAATCACTATTTTAAAAGAACTTCAAATTCACCTGGATTAAAACTCTGTTATGATAGCTTTAAGATCTAACACTTTGTGGTAGAATTTATGTATAAGTTGTTTCCTATTTTCTATGTGTTACTTACTATCAGCATTTATTATATAGTACAAACCCAAggcaaaattaaatataatagaaATCTCACTAACTAGTCTTGATCATTGATATGCTGTGTCAAAGCATTTGAAAATGTGGTAATGTAAGTGTGAAAATTTTAGATACAACATATCTAAaggtatatacactcaccagacaATTTAAtaggctggtgagtgtatatacatttcgtcattcatgtatttatccaatcagccattcatgtggcagcagcacaatgcatgagaatggccagactggttagagCTAACAGAAAAGCTCTGGTAATGCACATAATCTCATTTCTACAACACtgataagcagaaaagcatctcagaacgcaaactacatcaaaccttgaagcagatgggctttaacagcagaagactacatcggGGAGGAATCcaagtgggcacaggctcaccgaaactgggcAGTTTTAAATTGCgtaaagaccaggcaatgtttttccaatcttcaactgtccagtttctgtcgttttgtttttcgcaccattctgtaagaattatattgttgtgtgtgaaaatcccaggagattaacaatttctgaaatactcaaaccagcccatctggcacaaccaaccatgccatggttaaagtcactaagttcacatttcacatttcaatttcacatttcacaatcCCTttaacatttccacattttgtggTGTTACAATCTGGAAATAAAAATGGTCTTAATTTGGTTTATACATCACCAATCctcacaaaatagcccataatattgtaGTGCGTAGGGACGTCTATAtgttttgaaaaatgatttacaaattaGACAAATTTTATTCAGATAAATAGGTGACTTCTgatggttg
>XM_034311714.1
TTTTAAAAGGAACAGCAGAGGCACGGGATACAAGAACGTCAGAAGACAGTACATATAGCCCAGGGTTCAGCTGAAGATGAAGGTCTTGCCAGTCGTTCTACTGATTTTGGCCTTTGGCCTAATCTCAGATGCTGTGATTGTTCATgaaGGAgaattttctttctcactcGAATCAGTAAAAAAGGTTTGGGACATCCTGGCTAATGAAGAGTCAACCAAACAGACCAATCCCTTAAGCGTGTTCAGCGCTGTGACAGTGTGTGAAAACCCACTCCTTCCTGAGGAATTTCAGCCTCTGTGCCAAAGCAAAAATGCACAATTTCATTTCTCCAGACTTGCACTTCTCTCCGGGAAAAAGGATGTATGTGAGATCTGTGCATTTGCTGCTTGCACTGGTTGCTGAACATGACTCAGCATTATACTGATACTTCAAGATCTAAAATCTTACTCTTTTTAAATTccacttatttttattagtttgacAAATTCATTATGCATACTTGTATGTaatctgtctctgtgttgtAATCATTTTTATCTCCAATCACTATTTTAAAAGAACTTCAAATTCACCTGGATTAAAACTCTGTTATGATAGCTTTAAGATCTAACACTTTGTGGTAGAATTTATGTATAAGTTGTTTCCTATTTTCTATGTGTTACTTACTATCAGCATTTATTATATAGTACAAACCCAAggcaaaattaaatataatagaaATCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298530 True 1578 lncRNA 0.37 3 9768247 9771563
XM_034311714.1 False 726 mRNA 0.37 3 9769053 9771517

Neighbor

gene id symbol gene type direction distance location
eif4g3b eif4g3,LOC108434436 coding downstream 2393 9729374 ~ 9765854 (-)
slc2a1a LOC108276488,LOC108434426,LOC106565867,LOC107703064,LOC107591105 coding downstream 104293 9652431 ~ 9663954 (-)
rap1gap LOC108276112,LOC108434374,LOC107716101 coding downstream 164890 9517287 ~ 9603357 (-)
gpr157 gpr157,LOC108434350 coding downstream 331083 9431703 ~ 9437164 (-)
LOC113530597 LOC108432612,LOC108276125,LOC108236859 coding downstream 343347 9417550 ~ 9424900 (-)
lactbl1a LOC108275962 coding upstream 2920 9774483 ~ 9780995 (-)
dhrs3a dhrs3,dhrs3a,LOC108275517,LOC107703071,LOC107712670,LOC107737702,LOC107593436,LOC107687474 coding upstream 150615 9922178 ~ 9928130 (-)
igsf21b igsf21,LOC108275566,LOC107712688,LOC107593375,LOC107687403,LOC107737570 coding upstream 157705 9929268 ~ 9942531 (-)
arhgef10lb LOC108275881,LOC108434548,LOC107591110,LOC107712685,LOC107703072 coding upstream 173288 9944851 ~ 9982274 (-)
LOC113530673 rpl22,LOC102779685 coding upstream 227314 9998877 ~ 10002568 (-)
LOC117599281 NA non-coding downstream 59444 9704915 ~ 9708803 (-)
G251963 NA non-coding downstream 269946 9498090 ~ 9498301 (-)
G251955 NA non-coding downstream 278384 9488270 ~ 9489863 (-)
LOC117599283 NA non-coding downstream 316079 9449297 ~ 9452168 (-)
G251924 NA non-coding downstream 328611 9439347 ~ 9439636 (-)
G252265 NA non-coding upstream 75553 9847116 ~ 9849696 (-)
G252311 vps13d,LOC107712684,LOC107687459,LOC107737673 non-coding upstream 123721 9895284 ~ 9895525 (-)
G252331 NA non-coding upstream 145866 9917429 ~ 9920148 (-)
G252479 NA non-coding upstream 283314 10054877 ~ 10056083 (-)
LOC117599207 NA non-coding upstream 408225 10179788 ~ 10181888 (-)
ttll10 ttll10 other downstream 1189647 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 2258456 7476205 ~ 7509791 (-)
nmnat1 nmnat1 other downstream 2359990 7399793 ~ 7408257 (-)
c16h1orf127 c15h1orf127,tardbp,LOC107570713 other downstream 2444301 7249631 ~ 7323946 (-)
rps26 rps26,LOC103039794,LOC108433306,LOC100304575 other downstream 3460374 6304844 ~ 6307873 (-)
G252373 NA other upstream 257929 10029492 ~ 10029993 (-)
usp21 LOC108276040,LOC108432659 other upstream 689131 10460694 ~ 10469796 (-)
sinup NA other upstream 864938 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 1237900 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 1248968 11020531 ~ 11025009 (-)

Expression


Co-expression Network