G252336


Basic Information

Item Value
gene id G252336
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9998684 ~ 10001448 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU298668
AGATCGTATTTTTTAACAAGTTATcacatattgcattttttttttccaatatcaGTGCAGCCCTATTCTGGACCATGAACATAATCTGaaagtatgttttgttttgtttaaattctGGCCAAACCAGTGTGTGCTGTTTAATTACTGAAGGACAAtccaagggaaaaaaaaaaagtctctgaaaagctgaaaatcattgttaaatgaatttatttaaacgtataaaaagaaacagtttaatcttcatcctcttcatcctcctcgTCCTGGTTGATCTGGAAGTAGCGAAGTTCATAGCTCTCCTTCGTATTAGCCACAACACGCAGCCAGTCTCTGAGGTTGTTCTTCTTCAAATACTTCTTGGTAAGATACTTCAGGTACCTTTTTGGAGAAGGGAACCTCGGAAGAAACTGTGATCTTGCTTTTGCTCCTCTCAATAGTTATGACTCCACCACCGAGGTTTCCTGCTTTGCCGTTCACTTTGATGCGCTCCTGAAGGAACTGCTCctgtgagaacacacacataataacaaCTTCAAACTTTAACCATAGGAAAATCCAGATTTACTACAGCGTGGGTCTTATGAATCAAGACTGGTCATAGACAGGGGTGATCATGCAGGGGGCATATCACAAGATAAAAACATTTTGCgcaaatacattaaaaaaaaaaactctaaccCTGCTAGTAGTGGGATTCTTTCAGCCACATGACTGCAACAATCTTGAGCACCGACCCAAATTATCagtgtgtgaaaaatgtgtgtgtgcaggccaGTGAAAGCACCAAAATTAAGGTGAAGCTTTTAAACTCCCTTTAACTTTTAAACTGTTAAGGAAGAGCTTTACCTTTGAgattacaaagcgctgatactggagacttcttccacaaatgctaaataaatgtctactcACAGAAATCCTCAATAACGACGCaacatttttatcagtttatgtggaacatccaccaCACATTCCTGTGTAAGAGGGGAACAGATATGATgaagtattagaacaagctcattaatataaacctgtgatttgctttgtaGCTATTGTCAAAGCTGGCgctatagaacattaatcaacaccctctgaccaactGGAATTGGCCAGTTTATGGCCCTTGCTCCTATTAGAGAGCGTGGGTTCAATTCTTCAATTCATCAAGTTTCTGATGCTAGAATAATGGTACAAGGTTGGCTTCTGTAtgagtaaaattattattattattattattattattattattattattattattattagactacTTTAGATTTAGATGCTAACAGGAGCTGTGTGTCTGCACTCACTTCTACATGTTGTTTTAACACCTCACAATGTAGGCATGTGTGCATAATGAATCATTCATTCTGAGGCATGGCGTGAGCTGTGCATGCGCAACCGTATTGGAGAGGATATTGTCAGTAGTATTCGTTTCTGCATACACCTTGTGCTTTACACCAAGTGGTGTATGAATGGTGTATGAATGGtgtatgaaaaagaaaatgcaaaaaaaaaaagaagaagaagaaagaaagagagattaaTAGTGATATGTCTTATATGTCTTCAATGTTGaggctgatttaaaaaaaaaaaaactacatttcatGTGTAGCTAAATTAAATGGCTGGCTTGACCGGGGTTAAATCACACTACAGCACACAAGTTCTCACAAGTTCCTAAATTTATCATACACTACAGCTATTAAACAAACAGGAGCACATGACACGCCTGACCATAACTACATGAAACATCGATTTACACTCTAAGCCCAacggtttgtggacacctgaccatcacacccgtatgtggttTTTCCGCAAACTGTTATCActaagttggaaacacacaactgtataggatgtctctgtatgccgcagcattacaatttcccttcactggaactaagagacccaaacatgctccagcatgacaatgcccctgtgcacaaagcgagctccatgaagacgtgCTGCGTCTCAATTCACCTACTATCCGTCCTAAACAGTAcccgagattagaattagtgtgtcccaaataGTCGTACATTGAAAGGAGTACACCAAAGCTACCTGGATGGTCTGGTAGATTTTTGAAGTGTGGATCCGTGGACACTTTGTCAGCTAATATTGCCCACAACTCCTTGCGTGAGGGAGGAGGCGTTTTTATGACGGTTTGCTTCACCGAATTCAAGGATGCATTTTACAGAGatgtaaataatgaatgaagaaaagctgaaatgtaaGGAAAACTTTGGTTACTGTGACACACAGTGTacgtaactaggcaacaacgATCTCTTCTGTTACatgaacaccttcgggatgaactggaaaaCTGCCTGCACCCCagggggaactaaatctggaatatgatgttgaaaagcacatatgggtgtgatggttgaGTTTGAGGTGCCTCCTTTCCTCAGAGCCACTCTCTCATCCAGCTTATAATGAGAAACTGATAAATAATGACAGAGATTTTATGCAAAAGTCATTCTCAACAATGTCTTTCTAAGAAAGTACAATAATTAAGGAATTTGATGCATTTGTTTCCTTTacttaaatacatacatacacacacatatatatatatatatatataaatatcccatgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298668 True 2646 lncRNA 0.38 2 9998684 10001448

Neighbor

gene id symbol gene type direction distance location
rcc2 rcc2 coding upstream 825 9986582 ~ 9997859 (+)
vps13d vps13d coding upstream 78560 9873011 ~ 9920124 (+)
lrrc38a LOC108275654,LOC108432618,LOC107737569,LOC107703049,LOC107712669,LOC107591108 coding upstream 131607 9856373 ~ 9867077 (+)
ephb2a LOC108275960,LOC108434494 coding upstream 150715 9791778 ~ 9847969 (+)
phc2a phc2,LOC108434472 coding upstream 269915 9679602 ~ 9728769 (+)
rnf207b rnf207,LOC108434591,LOC107593377 coding downstream 2238 10003686 ~ 10015983 (+)
LOC113530819 LOC108275587,LOC108275676,LOC108275637 coding downstream 29872 10031320 ~ 10032702 (+)
LOC113530826 LOC108275587,LOC108275676,LOC108275637 coding downstream 40320 10041768 ~ 10043303 (+)
her12 LOC108275589 coding downstream 53375 10054823 ~ 10056095 (+)
zgc:154075 zgc:154075,LOC108276260,LOC108434639,LOC108412762,LOC107593441 coding downstream 150873 10152321 ~ 10164663 (+)
LOC117599238 LOC108275881 non-coding upstream 51752 9944562 ~ 9946932 (+)
G252116 NA non-coding upstream 268629 9708095 ~ 9730055 (+)
G252102 LOC108276488 non-coding upstream 342291 9654882 ~ 9656393 (+)
G251988 NA non-coding upstream 455044 9542129 ~ 9543640 (+)
G251921 NA non-coding upstream 559888 9438560 ~ 9438796 (+)
G252389 NA non-coding downstream 163260 10164708 ~ 10165255 (+)
G252422 NA non-coding downstream 165101 10166549 ~ 10166791 (+)
G252674 NA non-coding downstream 538999 10540447 ~ 10540656 (+)
G252675 NA non-coding downstream 539822 10541270 ~ 10541479 (+)
G252665 NA non-coding downstream 619201 10620649 ~ 10633419 (+)
LOC113530359 rnf223 other upstream 1371659 8620982 ~ 8627025 (+)
fam131c fam131c other upstream 1553079 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 1616501 8352779 ~ 8382183 (+)
atp13a2 atp13a2,LOC107593939 other upstream 1660618 8312773 ~ 8338066 (+)
htr6 htr6,LOC107738420,LOC107558748,LOC107664185,LOC107754887 other upstream 1742536 8253674 ~ 8256148 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other downstream 269355 10270803 ~ 10342428 (+)
si:dkey-32e6.3 LOC108276471 other downstream 771223 10772671 ~ 10779860 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 842163 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 870581 10872029 ~ 10913596 (+)
oard1 oard1 other downstream 1229930 11231378 ~ 11237367 (+)

Expression


Co-expression Network