G252675


Basic Information

Item Value
gene id G252675
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10541270 ~ 10541479 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299104
CTCCTACTCCCACACACTGATACAAGCTGAACATAAACTGAgctgaaaacaaaactgactCAAGGTATACTATTGCCATCTAATGGTCAGAAAAAAAGCCTTGTGAATTTCAGATCTCTTCATGAAAGACATTACATTACCATTGGTCCTACATGTTATTGTTCATACGCTTTATGACCATACGTTATTATCTTGAATGGGACTATAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299104 True 210 lncRNA 0.36 1 10541270 10541479

Neighbor

gene id symbol gene type direction distance location
znf362b znf362b,LOC108276192,LOC108434701,LOC103043470,LOC107737708,LOC107565834,LOC107593390 coding upstream 103613 10422931 ~ 10437657 (+)
pax7b pax7b,pax7a,pax7,LOC108275561,LOC107672046,LOC107593389,LOC107687391,LOC107565832,LOC102296763,LOC106964226 coding upstream 295425 10201044 ~ 10245845 (+)
LOC113530271 LOC108276422 coding upstream 352182 10181492 ~ 10189088 (+)
zgc:154075 zgc:154075,LOC108276260,LOC108434639,LOC108412762,LOC107593441 coding upstream 376607 10152321 ~ 10164663 (+)
her12 LOC108275589 coding upstream 485175 10054823 ~ 10056095 (+)
taf13 taf13,LOC107671955 coding downstream 76447 10617926 ~ 10618814 (+)
si:rp71-17i16.5 LOC108276435 coding downstream 97287 10638766 ~ 10651923 (+)
si:rp71-17i16.6 NA coding downstream 117689 10659168 ~ 10663619 (+)
lamb2l lamb2 coding downstream 123549 10665028 ~ 10710143 (+)
lamb2 lamb2,LOC108275997,LOC108410445,LOC107737594,LOC107699592 coding downstream 171284 10712763 ~ 10744388 (+)
G252674 NA non-coding upstream 614 10540447 ~ 10540656 (+)
G252422 NA non-coding upstream 374479 10166549 ~ 10166791 (+)
G252389 NA non-coding upstream 376015 10164708 ~ 10165255 (+)
G252336 NA non-coding upstream 539822 9998684 ~ 10001448 (+)
LOC117599238 LOC108275881 non-coding upstream 594338 9944562 ~ 9946932 (+)
G252665 NA non-coding downstream 79170 10620649 ~ 10633419 (+)
LOC117599292 LOC108275548,LOC103044939,LOC108434838,LOC102220172,LOC108233014,LOC102782874,LOC100703845,LOC107391429,LOC101472191 non-coding downstream 83373 10624852 ~ 10628804 (+)
G252720 NA non-coding downstream 114328 10655807 ~ 10656025 (+)
G252732 NA non-coding downstream 223647 10765126 ~ 10766107 (+)
G252893 NA non-coding downstream 403601 10945080 ~ 10946913 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 198842 10270803 ~ 10342428 (+)
LOC113530359 rnf223 other upstream 1914245 8620982 ~ 8627025 (+)
fam131c fam131c other upstream 2095665 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 2159087 8352779 ~ 8382183 (+)
atp13a2 atp13a2,LOC107593939 other upstream 2203204 8312773 ~ 8338066 (+)
si:dkey-32e6.3 LOC108276471 other downstream 231192 10772671 ~ 10779860 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 302132 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 330550 10872029 ~ 10913596 (+)
oard1 oard1 other downstream 689899 11231378 ~ 11237367 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 850955 11392434 ~ 11415449 (+)

Expression


Co-expression Network