G252856


Basic Information

Item Value
gene id G252856
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10778985 ~ 10779600 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299329
AACCACCACTAAAAGTAACATCTTATAATTCACTCCTTTCAGTAGCAGcataactacattttttttttttaaaaaaaaagaacatttgagACATCCTGAAAATGATTACATTATATCATATGCATATATGGATCATAAATATGTGGAATATATTAGCCATGGCAATTTTATAaccttataaataaaaatgctgactACACCCTCTGCTGATGACACCCCATGTCATGATTTCACTTGAACtgtcatgttatttatttatcaagcACTATTAAGCACTTCCATTGCAAGAGAAATAACATACATTTTTCAATATTCCTGAATTCACTTGAATTCAGCTATGTCAGAACAGTACAGCGGtggactgacatcccatccagggttcCGGCCTCATGctcagtattcccgggataggcttcGGATCCAGACCAGCGAGCATCCATCTGACCATACAGCATGATAAGGCAGTTACTGAATGTGAGTGAATAAGAGAAAACAGTAGGACACACTATTCGGTGTAGATCTGCGAAAGTGCGTCCCAGAGTAAGGAAATCCTTATATCTCCTATATCTCACGCTATGATAATAACAGACAGCAAAAACGACAGAAATTGTTCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299329 True 616 lncRNA 0.37 1 10778985 10779600

Neighbor

gene id symbol gene type direction distance location
LOC113530767 si:rp71-17i16.4,tnnc2,LOC103044939,LOC108275548,LOC108434838,LOC107737591,LOC107568845,LOC108233014,LOC103151310 coding downstream 148724 10625640 ~ 10630261 (-)
tnnc2 LOC108434847,LOC108276484,LOC103044421 coding downstream 155192 10620673 ~ 10623793 (-)
LOC113530527 col20a1,slc35c2,LOC108275935,LOC107699598,LOC107593422,LOC107565826,LOC107712705,LOC107699599,LOC107737589 coding downstream 159320 10570109 ~ 10619665 (-)
dpm1 dpm1,LOC107712706,LOC107737709,LOC107671953,LOC106566454 coding downstream 210226 10562324 ~ 10568759 (-)
adnpb LOC108275936 coding downstream 217514 10548390 ~ 10561471 (-)
tnnc1b tnnc1b,LOC107671989,LOC107568847,LOC108276054,LOC107593406,LOC105890642,LOC103374679 coding upstream 16207 10795807 ~ 10798598 (-)
cfap126 LOC108276287,LOC108276289 coding upstream 73417 10853017 ~ 10856962 (-)
emd LOC108275784 coding upstream 152506 10932106 ~ 10941252 (-)
flna flna,LOC101154674,LOC108436314,LOC107712729 coding upstream 163275 10942875 ~ 10973775 (-)
dnase1l1 LOC108275786 coding upstream 219500 10999100 ~ 11004596 (-)
G252833 NA non-coding downstream 67494 10710395 ~ 10711491 (-)
G252783 NA non-coding downstream 123463 10655314 ~ 10655522 (-)
G252610 NA non-coding downstream 382245 10396395 ~ 10396740 (-)
LOC117599279 NA non-coding downstream 490301 10244041 ~ 10288684 (-)
LOC117599207 NA non-coding downstream 597097 10179788 ~ 10181888 (-)
G252859 lrrc23 non-coding upstream 2535 10782135 ~ 10782588 (-)
G252920 NA non-coding upstream 85760 10865360 ~ 10865700 (-)
G252921 NA non-coding upstream 86636 10866236 ~ 10866696 (-)
G252944 LOC107560942,LOC107672007,LOC107737604 non-coding upstream 125286 10904886 ~ 10912465 (-)
G252967 NA non-coding upstream 215216 10994816 ~ 10997436 (-)
sinup NA other downstream 140267 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 309189 10460694 ~ 10469796 (-)
G252373 NA other downstream 748992 10029492 ~ 10029993 (-)
LOC117599234 LOC108275963 other downstream 1007422 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 2200385 8566656 ~ 8578600 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 229863 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 240931 11020531 ~ 11025009 (-)
LOC113530309 NA other upstream 676420 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 769794 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 1059196 11838796 ~ 11859346 (-)

Expression


Co-expression Network