G252893


Basic Information

Item Value
gene id G252893
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10945080 ~ 10946913 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299371
AgccattttaaccatttaggcatttaaaaaaaaataaaataaaaaaacacttctctGTACATTTTGCATGTATTGCATAGTATGGagattttcataaaaaaattggGCATGTACAAGTCGTACAGTTGTGCAACAAACACAGCATAGCacttgtacattaaaaaaaatactttaggGAAGGGTAAAGATTTCACTCAAAGACAGCTGAGCTCCATGGTTCATGATTATTACCTTCATCAATCTCAGTGACGCAGCACTCTTCCAATGCCCCCGATGGGCTGTGAACTTTAGCGTCTATGACACCCTTTGCTCCATTCAGACTCACAGCAAAAGAAGCAGGCTGGTTCACCTTTAAACCGGACTCCTGCATTCACATAATACTTCACAAATCAACTAGACATAGAATACACAGCACAGCACTGTAGGGTTGGTAAAAGCCCCTGGATATAGCATTAAGTACAAGGTTAAAATTCTACAGCAGTAGGACTAACATTGCTTACCTTCGGGCTAACAGAGTTAAAGAGAGGCTATATGAGACAACATTAAAAATCCCAATAAAGACTATTATTGCAGAAATGAGcagacatatatatacacttggAGAAAAGAGCTCTCTTTAACTCTTTAGCCCCTGGCTTCCATCCCTGCAGGCCATGTAGGGAGGGATTAAGACTGTTGGGAGCCTTTAGGACAAGGCACGAGAAATACAAACAGTCCTGGAGTATCCCGCAAACCCCATCAACCCTCaacacagcagcagcataaCATTCTCACTTAGACCCTTAGATTTACATCTTCACAAAATTACTATCAACATTACAATGAATATctgagtgaaataaaacaaacaaaaaaataaaacagtaaaaaaataaaacaaacaaagagtTTTATCAAAATCCCATCTTGCTGATTAAATGTTAAGCTAGCCAATCTTATGTGGATATGTAACAAAGAAAACCTGtcaacaaaacattaaaaattcaaCTAAATTCTTCTCCTTCTTAATGGTTGCTCACATGGAATgagtaaacaaatgaaaaagataAGGTGTCTGCTGACAGCAAGTAACAAACAAAATCTTTCAGAACGTTTCACCCTTCTCCCCATGATTTTACTACAAGGTCTGTGCCTGAGATTTTGTGCTGCTGTGCTGAGTGTTGCCTGGGAATTGTTTGGGGTGGACAAATGTCTGTCTTCCTCGAAGCCTCACCTGAAGACTGGCAACAGTAAGGCGACGGGCATCATCAGAAGGTGAGGCGACAGGCACCACGAAGGGACTGTCAGGGATGTGCTCATCGTTGAACTTGATGGACACTTCATAATCTCCTGCAAAGCAAGTCCAAAAACAGCTCCTGGACAATGTAGGAGACGCCACTGGAGCCATCCTTACGGTCTTCAAAAGCGATCTCCGCTTTGCTAGGTCCCTCCACAGCGATGGATAAACCTCCAGCTCCAGCCTCACGAGTCCATATGCTGAACTCAGCTGAAGGAAGCAGGATGAGGAAAATGTCAATTTCTCTCCTCACACAAATATGTATATAGAATTATCCTTACGTTTTAAAAAGTGCCAGAGTACACTCTGCTTTATGTTAAAAACATGCAATACAGCATGTTCCAAAAAGTCACAAGttttacagataaataaattaaaccacAATAATTGCTTGAGGTGAATATTGtcaataattgaaaaaaattcaaacaaattaaaTGCGTTTACTGAGTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299371 True 1731 lncRNA 0.39 2 10945080 10946913

Neighbor

gene id symbol gene type direction distance location
si:dkey-93l1.9 NA coding upstream 13114 10930247 ~ 10931966 (+)
haus7 haus7 coding upstream 17871 10918275 ~ 10927209 (+)
ccnq fam58a,LOC107699584,LOC107671950,LOC107737713 coding upstream 79896 10857643 ~ 10865184 (+)
bgnb bgn,LOC107712721,LOC105006929,LOC107699588,LOC107672034 coding upstream 103887 10824171 ~ 10841193 (+)
si:dkey-32e6.6 LOC108276052 coding upstream 129046 10802060 ~ 10816034 (+)
rpl10 rl10,rpl10 coding downstream 47964 10994877 ~ 10997433 (+)
LOC113530991 NA coding downstream 49696 10996609 ~ 10996743 (+)
LOC113530834 NA coding downstream 57923 11004836 ~ 11006641 (+)
ognb LOC108276132 coding downstream 62868 11009781 ~ 11014655 (+)
dnah12 dnah12 coding downstream 104610 11051523 ~ 11079274 (+)
G252732 NA non-coding upstream 178973 10765126 ~ 10766107 (+)
G252720 NA non-coding upstream 289055 10655807 ~ 10656025 (+)
G252665 NA non-coding upstream 311661 10620649 ~ 10633419 (+)
LOC117599292 LOC108275548,LOC103044939,LOC108434838,LOC102220172,LOC108233014,LOC102782874,LOC100703845,LOC107391429,LOC101472191 non-coding upstream 316276 10624852 ~ 10628804 (+)
G252675 NA non-coding upstream 403601 10541270 ~ 10541479 (+)
G252903 LOC108249180,LOC108436314,LOC101154674 non-coding downstream 2756 10949669 ~ 10961642 (+)
G252955 NA non-coding downstream 51168 10998081 ~ 10999820 (+)
G252966 NA non-coding downstream 91305 11038218 ~ 11039431 (+)
G252996 NA non-coding downstream 157226 11104139 ~ 11104527 (+)
G253152 NA non-coding downstream 297848 11244761 ~ 11245472 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 31484 10872029 ~ 10913596 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other upstream 92552 10843611 ~ 10852528 (+)
si:dkey-32e6.3 LOC108276471 other upstream 165220 10772671 ~ 10779860 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 602652 10270803 ~ 10342428 (+)
LOC113530359 rnf223 other upstream 2318055 8620982 ~ 8627025 (+)
oard1 oard1 other downstream 284465 11231378 ~ 11237367 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 445521 11392434 ~ 11415449 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 523138 11470051 ~ 11479376 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other downstream 536506 11483419 ~ 11507750 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other downstream 647591 11594504 ~ 11640907 (+)

Expression


Co-expression Network