G252921


Basic Information

Item Value
gene id G252921
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10866236 ~ 10866696 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299404
CAGGGTTCAAATTTGATAGGTCTAATGCAGGAGGGCTTTTGGGCCAAGAAGAAGCTTTTATCTGCTTAAGAGTGTCCTGTAGGAATTGTATACAAATGTGCAAATACAAAGACACATACCTATAAAGCAGTTGTgcaaatgttcttaaatggatcacagcaaaaacacaaacacacaaaaagtgcAAGATCTGAGGTCTCCCTGTTATagttaattttatattttctaaaatttctGTTTCTAAAATTGTTAGTATTGCCAGGCTAAGCACAGAGTTAACTACAACTGCTCTACTCATACAAACCACTGCATTTACCAGTGTGCCATCCAGTAGTGGCAGCCTACACTTCAGTCCTATGAACCTCCCTGCtctgcatacacatacacagaggccaTCTTCCACCACAACCTTGCCTCAGACACATTTgtgaggtgtggcctgtgtggtgGAGTAAAGTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299404 True 461 lncRNA 0.41 1 10866236 10866696

Neighbor

gene id symbol gene type direction distance location
cfap126 LOC108276287,LOC108276289 coding downstream 9274 10853017 ~ 10856962 (-)
tnnc1b tnnc1b,LOC107671989,LOC107568847,LOC108276054,LOC107593406,LOC105890642,LOC103374679 coding downstream 67638 10795807 ~ 10798598 (-)
LOC113530767 si:rp71-17i16.4,tnnc2,LOC103044939,LOC108275548,LOC108434838,LOC107737591,LOC107568845,LOC108233014,LOC103151310 coding downstream 235975 10625640 ~ 10630261 (-)
tnnc2 LOC108434847,LOC108276484,LOC103044421 coding downstream 242443 10620673 ~ 10623793 (-)
LOC113530527 col20a1,slc35c2,LOC108275935,LOC107699598,LOC107593422,LOC107565826,LOC107712705,LOC107699599,LOC107737589 coding downstream 246571 10570109 ~ 10619665 (-)
emd LOC108275784 coding upstream 65410 10932106 ~ 10941252 (-)
flna flna,LOC101154674,LOC108436314,LOC107712729 coding upstream 76179 10942875 ~ 10973775 (-)
dnase1l1 LOC108275786 coding upstream 132404 10999100 ~ 11004596 (-)
kctd6b kctd6b,kctd6,LOC108436290,LOC107671957,LOC107737715,LOC107570288,LOC103028649 coding upstream 150120 11016816 ~ 11019715 (-)
slmapb LOC108276397,LOC108436320 coding upstream 163371 11030067 ~ 11039455 (-)
G252920 NA non-coding downstream 536 10865360 ~ 10865700 (-)
G252859 lrrc23 non-coding downstream 83648 10782135 ~ 10782588 (-)
G252856 NA non-coding downstream 86636 10778985 ~ 10779600 (-)
G252833 NA non-coding downstream 154745 10710395 ~ 10711491 (-)
G252783 NA non-coding downstream 210714 10655314 ~ 10655522 (-)
G252944 LOC107560942,LOC107672007,LOC107737604 non-coding upstream 38190 10904886 ~ 10912465 (-)
G252967 NA non-coding upstream 128120 10994816 ~ 10997436 (-)
G252969 NA non-coding upstream 139256 11005952 ~ 11006617 (-)
LOC113530895 NA non-coding upstream 171126 11037822 ~ 11038968 (-)
LOC113530615 fam208a non-coding upstream 222369 11089065 ~ 11091335 (-)
sinup NA other downstream 227518 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 396440 10460694 ~ 10469796 (-)
G252373 NA other downstream 836243 10029492 ~ 10029993 (-)
LOC117599234 LOC108275963 other downstream 1094673 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 2287636 8566656 ~ 8578600 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 142767 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 153835 11020531 ~ 11025009 (-)
LOC113530309 NA other upstream 589324 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 682698 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 972100 11838796 ~ 11859346 (-)

Expression


Co-expression Network