G252967


Basic Information

Item Value
gene id G252967
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10994816 ~ 10997436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299463
CACTTCATAATCAAAAcacagtttgattttatttactaCTTCAGATAACTGAGCGCTCAATCTCACACAAAAGTATGGTGAGTGTGAAGTGCTTAGATGGTGTGCAGTGCCTTCCAGCGGCTCAGTGGCCCGTGGCTGGGGACGTATTTCACACTGCAACCATCAGGGATCACACGCTTCTCCTGCAGCAGGTCATCAAAGTCAGCGGTGTTAAACTTGGTGAAGCCATACTTCTTGGAGATGTGGATCTCTGACGCCCAGGGAACTTGAACTTAGCTCTCCTCAAAGCCTCAATGACATGTTCCTTGTTCTGGGTCTTTGTGCGCACAGGATAACATTTTGTTGATGCGGATGACGTGGAATGGGTGCAGGCGCACGCGGATGTGGAAGCCATCTTTACCGCATGTCTTCACCATGTACTTGTTGGCACAGATACGGGCAGCCTCAAGAGCTACACAATGCCAGATATACAGTTTAACATTAGTAGAGTAACAGCAAAACACTTGTCAAGACAAAAAGCTTTCAAACTGACAGGAGAACTTTAATTTGAATACAtgtgggtacattcttaaaactTTATCCTTCCACTTACCCTCAGAGGACAGCTGCTCATACTCATCAGACACCATGTGGCCACACAAGGGGAATTCATCCACCTTAGCCTTCTTCCTGCCCAAGTCGAAGATCCTGATCTTTGGATCTGGGTTAAGCAGAGAGAATAGCcatcacacattcacatcaaCTTAGTCTGCACCATTGCAAGTATGGGATCTAtcaatttaattacattttctgcTAAGTTTAGAGATTGTGAATatttcaagcaaacacataaCAGTGTTGCATTAATTTGTTTTCCCCATAACATACACAATATAAGTCATGCATTTAAAGCTTACTAAGAATTAATTATAATCTCTGGTTTCtgtgaaataaatgcaaatgacaGTGTGCCTTCATGTGTCTTTAATATTGAGTGTGGACTTATACACTTATGATCAGTCTGAGGTGAACCACTCCCCCCAGTAAATCCACATACTAGTTGCAggtcattatttaaatgataaagCATTTTAAGGGTGATCAAAGGTTGATCAAAATCAAAGCTATGGAGAGGTGACCCAGAATGTTTAGAGATGACTGGCcacttttttgttaattatgtGTTCTTAAAGATCTTACTTTTGgttatttacattttgcagcaaaaaaaaaaaaaaaacacacattttaagcCACCTCTTCCTTGCatgtaatttttgtatttttctgaatgcctttcatgttgtggaactaACATTTATGTTGTATTAGACTGTGATGGATCTGTTTGTATAgttagaaaaaaacaactttaagcTGTCCCCCACATAATGCTCCACATTGGATCATCCagttaaacagtaaataaataaatacatacataaataaataagcttttcCAATTAAAGCAATGCATGTCCTTACCAGGTACACCCCGACAGAAACGGGACTTGGGGTAAGGCTTGTTCTTGCAGTATCTGTAGCTGGGGGTAAAGAGACAATTATCAGGAAAACAATTCAGTTGTTTAAAggactataaacagattaagtCCATTGAATTTCTTCACTGCAGACaaacctttgatctgaagctgaCTCATGGAGGCAACCATCAAACACATTACTGCTAACCATCTAACATTACTGCGACTATATCAACTAGCTACTCTTTACTTAAACCATCTATTATCATAATTCAATGAACATTCAAACGGCTACTCAATTTCTCTAGTATTTCTGCGCTAGTCCTCAGTCTAAGCAGTTACAGAAACACCtgctactagctagctagctagccgcTAAAGCCAGGCCAGGACCGCACATGGTTAGCGCGTCCTGCCATTTTCAGCTCCCTGCTCTCCACAgagaacatgaaaaatacacaaacttaCCAACGGGCTGGACGGCGCCCCATGGCTGCGacctgaaataaacacaaacacggttacttttataaaaacaaGCGCCACAAACACTTATTATCTAATAAGATTTTCGATAAATTTGTCAAGAGCGGGACTCAACACCATCCTTC
>TU299464
CACTTCATAATCAAAAcacagtttgattttatttactaCTTCAGATAACTGAGCGCTCAATCTCACACAAAAGTATGGTGAGTGTGAAGTGCTTAGATGGTGTGCAGTGCCTTCCAGCGGCTCAGTGGCCCGTGGCTGGGGACGTATTTCACACTGCAACCATCAGGGATCACACGCTTCTCCTGCAGCAGGTCATCAAAGTCAGCGGTGTTAAACTTGGTGAAGCCATACTTCTTGGAGATGTGGATCTACCGCATGTCTTCACCATGTACTTGTTGGCACAGATACGGGCAGCCTCAAGAGCTACACAATGCCAGATATACAGTTTAACATTAGTAGAGTAACAGCAAAACACTTGTCAAGACAAAAAGCTTTCAAACTGACAGGAGAACTTTAATTTGAATACAtgtgggtacattcttaaaactTTATCCTTCCACTTACCCTCAGAGGACAGCTGCTCATACTCATCAGACACCATGTGGCCACACAAGGGGAATTCATCCACCTTAGCCTTCTTCCTGCCCAAGTCGAAGATCCTGATCTTTGGATCAGGTACACCCCGACAGAAACGGGACTTGGGGTAAGGCTTGTTCTTGCAGTATCTGTAGCAACGGGCTGGACGGCGCCCCATGGCTGCGacctgaaataaacacaaacacggttacttttataaaaacaaGCGCCACAAACACTTATTATCTAATAAGATTTTCGATAAATTTGTCAAGAGCGGGACTCAACACCATCCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299463 True 2077 lncRNA 0.40 3 10994816 10997436
TU299464 False 754 lncRNA 0.45 4 10994816 10997436

Neighbor

gene id symbol gene type direction distance location
flna flna,LOC101154674,LOC108436314,LOC107712729 coding downstream 21041 10942875 ~ 10973775 (-)
emd LOC108275784 coding downstream 53564 10932106 ~ 10941252 (-)
cfap126 LOC108276287,LOC108276289 coding downstream 137854 10853017 ~ 10856962 (-)
tnnc1b tnnc1b,LOC107671989,LOC107568847,LOC108276054,LOC107593406,LOC105890642,LOC103374679 coding downstream 196218 10795807 ~ 10798598 (-)
LOC113530767 si:rp71-17i16.4,tnnc2,LOC103044939,LOC108275548,LOC108434838,LOC107737591,LOC107568845,LOC108233014,LOC103151310 coding downstream 364555 10625640 ~ 10630261 (-)
dnase1l1 LOC108275786 coding upstream 1664 10999100 ~ 11004596 (-)
kctd6b kctd6b,kctd6,LOC108436290,LOC107671957,LOC107737715,LOC107570288,LOC103028649 coding upstream 19380 11016816 ~ 11019715 (-)
slmapb LOC108276397,LOC108436320 coding upstream 32631 11030067 ~ 11039455 (-)
atp6ap1lb atp6ap1lb,LOC108275547,LOC103031199,LOC108436292,LOC105890636,LOC107672058,LOC107737620,LOC107560932 coding upstream 45827 11043263 ~ 11049735 (-)
LOC113530590 LOC108275622 coding upstream 116843 11114279 ~ 11115673 (-)
G252944 LOC107560942,LOC107672007,LOC107737604 non-coding downstream 82351 10904886 ~ 10912465 (-)
G252921 NA non-coding downstream 128120 10866236 ~ 10866696 (-)
G252920 NA non-coding downstream 129116 10865360 ~ 10865700 (-)
G252859 lrrc23 non-coding downstream 212228 10782135 ~ 10782588 (-)
G252856 NA non-coding downstream 215216 10778985 ~ 10779600 (-)
G252969 NA non-coding upstream 8516 11005952 ~ 11006617 (-)
LOC113530895 NA non-coding upstream 40386 11037822 ~ 11038968 (-)
LOC113530615 fam208a non-coding upstream 91629 11089065 ~ 11091335 (-)
G253174 NA non-coding upstream 267473 11264909 ~ 11265149 (-)
G253383 NA non-coding upstream 356066 11353502 ~ 11354217 (-)
sinup NA other downstream 356098 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 525020 10460694 ~ 10469796 (-)
G252373 NA other downstream 964823 10029492 ~ 10029993 (-)
LOC117599234 LOC108275963 other downstream 1223253 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 2416216 8566656 ~ 8578600 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 12027 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 23095 11020531 ~ 11025009 (-)
LOC113530309 NA other upstream 458584 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 551958 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 841360 11838796 ~ 11859346 (-)

Expression


Co-expression Network