LOC113530950 (smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281)


Basic Information

Item Value
gene id LOC113530950
gene name smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11009463 ~ 11015666 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299470
TGCGCTGTCATGTCAGCCTGCAGTGACATGCATGAGTGTAAAGAAGGACAAGAAAATGTCACAGTGTGATTGAATAACAGCGCTAGGTTTTTGAGGTATATGAGTTTTCAAGTGGTCTTCGCCGATACTCACAGTAGACGTTTAAGTGCAAAGATTTTGCGAAGGAGGCGACATGTttagaaataacaaaaacatgaagTATATCCTAAGTCTTGTACCCGGGAAACGACGCTTCGGAATTTACCGGTTTTTGCCCGTCTTCTTCTGCATCGGCGGTGTCATGGAGTGGGTCATGATAAACGTGCGAATAGGACGAGAGACGTTTTaTGATGTCTACAGGAGAAAACGCTCTGAGAGGGAGTACCAACAGAAAATTGAGGATGGAATAACTGTACCTCCTGAATCAGaaccaaaataaacatttttcactcCTGCAAATATGTTCTTTCTAGCTGAGCAAtaccagTCCCTCCACTGGATCTTCAGCTTAAATGTAGAGGCCAATTGGAAGAGATTTCAGACAGATGAAGCTGTTCGGATGCTGAGCAAGAACCACCGGGTTTCCATCCAGTCGCACCTCCTGCATGTTGTACCTGATGTAGTGTGTGTCGTTGCCCTTGCAGAAAGTGTCATCCGTCAGGGTGGTTATGTTATTATTCTGCAGGGAGAAACAAAATATCATTCTTTTCTTATTGGGCAAAAATTTGGTTGTCTGatgctatatattttttctacCCATGGACATGATAGAAAATACAATTTGATGTTTAACCATAAAGTCAGGCATCTTTTTTGAGTTTCTGTAATTATTTGTGTTTCACTGATTACTTAATAATATAAACCCTTTGCA
>TU299471
TGCGCTGTCATGTCAGCCTGCAGTGACATGCATGAGTGTAAAGAAGGACAAGAAAATGTCACAGTGTGATTGAATAACAGCGCTAGGTTTTTGAGGTATATGAGTTTTCAAGTGGTCTTCGCCGATACTCACAGTAGACGTTTAAGTGCAAAGATTTTGCGAAGGAGGCGACATGTttagaaataacaaaaacatgaagTATATCCTAAGTCTTGTACCCGGGAAACGACGCTTCGGAATTTACCGGTTTTTGCCCGTCTTCTTCTGCATCGGCGGTGTCATGGAGTGGGTCATGATAAACGTGCGAATAGGACGAGAGACGTTTTaTGATGTCTACAGGAGAAAACGCTCTGAGAGGGAGTACCAACAGAAAATTGAGGATGGAATAACTGTACCTCCTGAATCAGaaccaaaataaacatttttcactcCTGCAAATATGTTCTTTCTAGCTGAGCAAtaccagTCCCTCCACTGGATCTTCAGCTTAAATGTAGAGGCCAATTGGAAGAGATTTCAGACAGATGAAGCTGTTCGGATGCTGAGCAAGAACCACCGGGTTTCCATCCAGTCGCACCTCCTGCATGTTGTACCTGATGTAGTGTGTGTCGTTGCCCTTGCAGAAAGTGTCATCCGTCAGGGTGGTTATGTTATTATGCAGATGCACAACACGCAGACTCTCAGGAAGTGGTGGAATGGCCTCCAATTCATTGTCACCAAGGTACAGGAATGCCAGTTTTTTGAGTTTCTGTAATTGCAAATGCATACATTAgattatttgtaaaatacatCATATAGATGATCTTTTTTGTAGAATACTGGCACACATTTATCAAATATTACCTTTAAAACAGTTGATCTGATGCCTTTTGTTTTGAGTCGATTGTGATTGGCATTGAGTGAGATAAGCTTTGGGGGCAGCATTGGTAGTTTGATTAGTCTGTTCTCAGCGAGTGTTAGTTCTTCTAGTTGGTCCAGTTTGGAGAAGGCTGCATCCTCGATTTCCGAAATGAGATTGCCAGTCAGATCGATTCTTTTCAGTGTGCctataataaatacacatataaacaatTTTAGAAAGCCATAGactgtaatgtaaaatataattctgAAAATATGCTTAGCTTTCTAAGTTTCAGTCAGAATAGTGTAATGACTTATTCCAGCACATAAGGAGTGAATTAGACATCTGGCTAAAGACTACAAGCTTTAGGCTGCAAGCTTTAATAGATCTAAAAACTCTCTCCTTATCAAGAGCTGTGTGCTGGCTTCAGATATTGCCTTTTGGAAAGTATCATTCATTATTCTGACTACACTGATTCAGAGCCAGATATTACACACTCCCAGCTGACACTCCTTACCAAAATCAGCAAAGTCCttcttagtgattctggtgatTTTGTTGAAGCGTGCATAAAGGTATGTGGTTTCCTTTGGCAAAGGTGGTACTGATATCATTTCTGGGTTGACCTCTTCACAATACACAGATCCagataaacatacacacagcaagCAAGTGGGAAGATCTAgggggaaataatcaacttaatcTTAAATACTTTTCTTGAATTAACTCGAATATTAACAGtgatgtatgtgtttatatataaattaaacaatcacctgcttcttttttctctacTGCTGAACCTTCGTCACTTGTATTATCAACACTTCCATAGTCTGGGGCTGCAATGACCTTTTCCTTtttttttcttcacctccATGAAAAAGCTATCATCTGTCTGCCATTTGTCAAAATCCACTATCAGTAAACCACTGTTTTGATGTTCCATTTGATCATTTTGTGCTGTTGAACATAACATCCATGGTACAAgcagaaaggagaaaaataacATCCTCGAGTCCATTTTCTATGGTTCAGAAGCGGTGCTGAGAGAGACCATTAGTGTGTACCTCTGTGTCTGAAATGAGAGCCTTTAAAGTCATTTTGTGGAGGCCCTGCCTATGAGctactgagacactgagacagcCCTTAACTCACTGTGTGCTGTTGTATGACATGTCAGGTAGAGGCCTTCCCAG
>XM_026921370.2
TGAGCATGCGCAATGACGTGAACACCGCCATGTTGCGCTGTCATGTCAGCCTGCAGTGACATGCATGAGTGTAAAGAAGGACAAGAAAATGTCACAGTGTGATTGAATAACAGCGCTAGGTTTTTGAGGTATATGAGTTTTCAAGTGGTCTTCGCCGATACTCACAGTAGACGTTTAAGTGCAAAGATTTTGCGAAGGAGGCGACATGTttagaaataacaaaaacatgaagTATATCCTAAGTCTTGTACCCGGGAAACGACGCTTCGGAATTTACCGGTTTTTGCCCGTCTTCTTCTGCATCGGCGGTGTCATGGAGTGGGTCATGATAAACGTGCGAATAGGACGAGAGACGTTTTaTGATGTCTACAGGAGAAAACGCTCTGAGAGGGAGTACCAACAGAAAATTGAGGATGGAATAACTGTACCTCCTGAATCAGaaccaaaataaacatttttcactcCTGCAAATATGTTCTTTCTAGCTGAGCAAtaccaggtgggaaaaatgaCATGCAATAAGACCTTTGCCAAGTGGATTTaagagtttattttttatgtagacTGAAGTGTACCTATTTTCCCAAATGAGGGTAACAGAACAAGCAAGGCCAATGGAacagttgcatttttttcaacatgtatttattaacaattacaAAATCTGATTATTAGAGCACATCACTTTTgtcataatcattttaatattttgtcaccTTTGTCAATCATTTTACCAAATTCATAAAATGAACATTCTTGCCTTTACAGGTATTGCATCTTTCCATGCATTAATTTTTacgtgttatttttttttttacagtttatttttccatgcaccacatgcttttaaaatattgtcTGATACATATACCACAGATGGTATACTATTCTGACATACTACTTAGTACAGTAGTTTGAGGTCTTAGACATCGCCAATGTCTAAACGCAAAGCAAAGTCTGGACTTGGCCAAGCTTTGAAAGCCTTTTGCAGATAGTAAGGGTGCTTGGAATAGTAACCAAATGTGGTTATATTAGCCCCTGGTGCCAGTTAGACAACTGCAGAGGGAGTGTGTCCTCTCTCTACAGTCCCTCCACTGGATCTTCAGCTTAAATGTAGAGGCCAATTGGAAGAGATTTCAGACAGATGAAGCTGTTCGGATGCTGAGCAAGAACCACCGGGTTTCCATCCAGTCGCACCTCCTGCATGTTGTACCTGATGTAGTGTGTGTCGTTGCCCTTGCAGAAAGTGTCATCCGTCAGGGTGGTTATGTTATTATTCTGCAGGGAGAAACAAAATATCATTCTTTTCTTATTGGGCAAAAATTTGGTTGTCTGatgctatatattttttctacCCATGGACATGATAGAAAATACAATTTGATGTTTAACCATAAAGTCAGGCATCTTTTTTGAGTTTCTGTAATTATTTGTGTTTCACTGATTACTTAATAATATAAACCCTTTGCATCCAAA
>XM_034312180.1
CTATGAGCATGCGCAATGACGTGAACACCGCCATGTTGCGCTGTCATGTCAGCCTGCAGTGACATGCATGAGTGTAAAGAAGGACAAGAAAATGTCACAGTGTGATTGAATAACAGCGCTAGGTTTTTGAGGTATATGAGTTTTCAAGTGGTCTTCGCCGATACTCACAGTAGACGTTTAAGTGCAAAGATTTTGCGAAGGAGGCGACATGTttagaaataacaaaaacatgaagTATATCCTAAGTCTTGTACCCGGGAAACGACGCTTCGGAATTTACCGGTTTTTGCCCGTCTTCTTCTGCATCGGCGGTGTCATGGAGTGGGTCATGATAAACGTGCGAATAGGACGAGAGACGTTTTaTGATGTCTACAGGAGAAAACGCTCTGAGAGGGAGTACCAACAGAAAATTGAGGATGGAATAACTGTACCTCCTGAATCAGaaccaaaataaacatttttcactcCTGCAAATATGTTCTTTCTAGCTGAGCAAtaccagtttatttttccatgcaccacatgcttttaaaatattgtcTGATACATATACCACAGATGGTATACTATTCTGACATACTACTTAGTACAGTAGTTTGAGGTCTTAGACATCGCCAATGTCTAAACGCAAAGCAAAGTCTGGACTTGGCCAAGCTTTGAAAGCCTTTTGCAGATAGTAAGGGTGCTTGGAATAGTAACCAAATGTGGTTATATTAGCCCCTGGTGCCAGTTAGACAACTGCAGAGGGAGTGTGTCCTCTCTCTACAGTCCCTCCACTGGATCTTCAGCTTAAATGTAGAGGCCAATTGGAAGAGATTTCAGACAGATGAAGCTGTTCGGATGCTGAGCAAGAACCACCGGGTTTCCATCCAGTCGCACCTCCTGCATGTTGTACCTGATGTAGTGTGTGTCGTTGCCCTTGCAGAAAGTGTCATCCGTCAGGGTGGTTATGTTATTATTCTGCAGGGAGAAACAAAATATCATTCTTTTCTTATTGGGCAAAAATTTGGTTGTCTGatgctatatattttttctacCCATGGACATGATAGAAAATACAATTTGATGTTTAACCATAAAGTCAGGCATCTTTTTTGAGTTTCTGTAATTATTTGTGTTTCACTGATTACTTAATAATATAAACCCTTTGCATCCAAA
>XM_034312181.1
CTATGAGCATGCGCAATGACGTGAACACCGCCATGTTGCGCTGTCATGTCAGCCTGCAGTGACATGCATGAGTGTAAAGAAGGACAAGAAAATGTCACAGTGTGATTGAATAACAGCGCTAGGTTTTTGAGGTATATGAGTTTTCAAGTGGTCTTCGCCGATACTCACAGTAGACGTTTAAGTGCAAAGATTTTGCGAAGGAGGCGACATGTttagaaataacaaaaacatgaagTATATCCTAAGTCTTGTACCCGGGAAACGACGCTTCGGAATTTACCGGTTTTTGCCCGTCTTCTTCTGCATCGGCGGTGTCATGGAGTGGGTCATGATAAACGTGCGAATAGGACGAGAGACGTTTTaTGATGTCTACAGGAGAAAACGCTCTGAGAGGGAGTACCAACAGAAAATTGAGGATGGAATAACTGTACCTCCTGAATCAGaaccaaaataaacatttttcactcCTGCAAATATGTTCTTTCTAGCTGAGCAAtaccagggaAGAACTTTGGTGAA

Function

symbol description
smim4 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299470 False 850 TUCP 0.41 3 11013964 11015630
TU299471 True 2046 lncRNA 0.40 5 11009824 11015630
XM_026921370.2 False 1476 mRNA 0.39 2 11013958 11015663
XM_034312180.1 False 1158 mRNA 0.41 3 11013958 11015666
XM_034312181.1 False 519 mRNA 0.43 3 11009463 11015666

Neighbor

gene id symbol gene type direction distance location
dnase1l1 LOC108275786 coding downstream 4867 10999100 ~ 11004596 (-)
flna flna,LOC101154674,LOC108436314,LOC107712729 coding downstream 35688 10942875 ~ 10973775 (-)
emd LOC108275784 coding downstream 68211 10932106 ~ 10941252 (-)
cfap126 LOC108276287,LOC108276289 coding downstream 152501 10853017 ~ 10856962 (-)
tnnc1b tnnc1b,LOC107671989,LOC107568847,LOC108276054,LOC107593406,LOC105890642,LOC103374679 coding downstream 210865 10795807 ~ 10798598 (-)
kctd6b kctd6b,kctd6,LOC108436290,LOC107671957,LOC107737715,LOC107570288,LOC103028649 coding upstream 1150 11016816 ~ 11019715 (-)
slmapb LOC108276397,LOC108436320 coding upstream 14401 11030067 ~ 11039455 (-)
atp6ap1lb atp6ap1lb,LOC108275547,LOC103031199,LOC108436292,LOC105890636,LOC107672058,LOC107737620,LOC107560932 coding upstream 27597 11043263 ~ 11049735 (-)
LOC113530590 LOC108275622 coding upstream 98613 11114279 ~ 11115673 (-)
apobec2b apobec2,apobec2b,LOC108276433,LOC107657013,LOC107712740,LOC107737624 coding upstream 222586 11238252 ~ 11242304 (-)
G252969 NA non-coding downstream 2846 11005952 ~ 11006617 (-)
G252967 NA non-coding downstream 12027 10994816 ~ 10997436 (-)
G252944 LOC107560942,LOC107672007,LOC107737604 non-coding downstream 96998 10904886 ~ 10912465 (-)
G252921 NA non-coding downstream 142767 10866236 ~ 10866696 (-)
G252920 NA non-coding downstream 143763 10865360 ~ 10865700 (-)
LOC113530895 NA non-coding upstream 22156 11037822 ~ 11038968 (-)
LOC113530615 fam208a non-coding upstream 73399 11089065 ~ 11091335 (-)
G253174 NA non-coding upstream 249243 11264909 ~ 11265149 (-)
G253383 NA non-coding upstream 337836 11353502 ~ 11354217 (-)
G253385 NA non-coding upstream 343849 11359515 ~ 11361585 (-)
sinup NA other downstream 370745 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 539667 10460694 ~ 10469796 (-)
G252373 NA other downstream 979470 10029492 ~ 10029993 (-)
LOC117599234 LOC108275963 other downstream 1237900 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 2430863 8566656 ~ 8578600 (-)
abhd6b LOC108275644,LOC108436291 other upstream 4865 11020531 ~ 11025009 (-)
LOC113530309 NA other upstream 440354 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 533728 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 823130 11838796 ~ 11859346 (-)
ptk6b LOC108276246 other upstream 1140062 12155728 ~ 12167795 (-)

Expression


Co-expression Network