LOC113530615 (fam208a)


Basic Information

Item Value
gene id LOC113530615
gene name fam208a
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11089065 ~ 11091335 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299537
CGCTCCTTAATCTTCCGCGGGATTTGGAAAGTCTTCCGCGACCACTCCTCGGCTGATCTGTGCAGCCCCGACGGTGAAGTGCTGCAGTTCTTCAAATCTGACAGCCCGCTCTTCCGCCGCTCACAAGCATCTTGTTCAGACATTTGCTCGTCTTCGCATCCAGCTTGATCGCCATTTTGCTTGGATGTAGTCGTGGTAGAGGCTGACAATTGTTCCTGGCTCTCGCTGCCGTCCAGACATAAGCCGCTGGTCTTGATGCCGTCCCGGTCGTATTTTCTGTCTTCGTTCAGATTGCAGGCCATTTTGGCCACCGATCACTTCGTCGACTGGCGATGAAGTTGGTTTCAGCGCCGCTTCACGGAGTAATTCTCCTTCTCAACCAGCCTCCGCCATTATGCCTCTGACGTGCGGCTTCCCTGCGCTGCGAAAACTCTGGCGTCACTCTGTTTACAAGTAGCCGAGCGCCACCCAAAGGCCAAACCCGAGGCCTCAGTCTGAACCGGTGGGGTCCGGGGACCTCCACATGGAGGGATCTGTAAAGCAAAGCCAAGAGGTCCTACAGTACTACTCAGATTGAATGGCAGCCATCGGACCCCAGGATCAAACCAGCTGTTTATCTGTCATGTAAACTGGCCGACTGGGTGGTGGGCATCATCACCATGGCCTATTGGCAGGCTGGATGCCATGCGCCTACTGTGACATCCCACTCTATGCGGAATGTGTCCCCATCTTCACCCCTCCCAGTGTTATGAGTGTGGCGGTCATCTCCGAACAATTTCCAGTGAGTCCTGAGGATGATCTGTTCCTCAGCACATCATGGCATAtgttatccaggtgattctGGTGTAGATATAACTGTGGTCCCGGATAACTCCCAGGATTCCTTGTCATTCAGAACCGACATTGACCCCACATGAACTCATAGTACCAAGGAAAGATGGCTGTATGAcagtgatatttacatttgtgtgatttatgaacAATAAAACT
>TU299539
ACCTAGCCATCTTGCACTCATTGTTAAAGGGTCAAATGTGAGCTGCATGGTCACATGACTTAAAGTTGCGTTTTCTCTGTACTGAGGCCTCTTAACTTGCCCATGGTTGTCTGATTTGCTCTTTAAAAACGTTTTGGTGTGTTACATTAACGCTACGTGAGCAGAGCCAGTGCTGAATGAGGAGTGGCAGAAGTGAGCTCTGTGGTGGCACCAATGTTGTCTTAACTACCGATGGAGCTATTTGGCTAGCACCCACTTAGCAACTTAGCACGACCAGGCTCAAATTACGAGACAGAAGTAACACATAATGTAGGACAGCCAGAAACTACTGCATATAAGCAAAGACATGGGTGCAGGTCCTACAGTACTACTCAGATTGAATGGCAGCCATCGGACCCCAGGATCAAACCAGCTGTTTATCTGTCATGTAAACTGGCCGACTGGGTGGTGGGCATCATCACCATGGCCTATTGGCAGGCTGGATGCCATGCGCCTACTGTGACATCCCACTCTATGCGGAATGTGTCCCCATCTTCACCCCTCCCAGTGTTATGAGTGTGGCGGTCATCTCCGAACAATTTCCAGTGAGTCCTGAGGATGATCTGTTCCTCAGCACATCATGGCATAtgttatccaggtgattctGGTGTAGATATAACTGTGGTCCCGGATAACTCCCAGGATTCCTTGTCATTCAGAACCGACATTGACCCCACATGAACTCATAGTACCAAGGAAAGATGGCTGTATGAcagtgatatttacatttgtgtgatttatgaacAATAAAACT
>XR_003403161.2
GTCACATGACTTAAAGTTGCGTTTTCTCTGTACTGAGGCCTCTTAACTTGCCCATGGTTGTCTGATTTGCTCTTTAAAAACGTTTTGGTGTGTTACATTAACGCTACGTGAGCAGAGCCAGTGCTGAATGAGGAGTGGCAGAAGTGAGCTCTGTGGTGGCACCAATGTTGTCTTAACTACCGATGGAGCTATTTGGCTAGCACCCACTTAGCAACTTAGCACGACCAGGCTCAAATTACGAGACAGAAGTAACACATAATGTAGGACAGCCAGAAACTACTGCATATAAGCAAAGACATGGGTGCAGGTCCTACAGTACTACTCAGATTGAATGGCAGCCATCGGACCCCAGGATCAAACCAGCTGTTTATCTGTCATGTAAACTGGCCGACTGGGTGGTGGGCATCATCACCATGGCCTATTGGCAGGCTGGATGCCATGCGCCTACTGTGACATCCCACTCTATGCGGAATGTGTCCCCATCTTCACCCCTCCCAGTGTTATGAGTGTGGCGGTCATCTCCGAACAATTTCCAGTGAGTCCTGAGGATGATCTGTTCCTCAGCACATCATGGCATAtgttatccaggtgattctGGTGTAGATATAACTGTGGTCCCGGATAACTCCCAGGATTCCTTGTCATTCAGAACCGACATTGACCCCACATGAACTCATAGTACCAAGGAAAGATGGCTGTATGAcagtgatatttacatttgtgtgatttatgaacAATAAAACTACTGAACATTAA

Function

symbol description
fam208a protein TASOR

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299537 True 990 lncRNA 0.52 2 11089077 11090683
TU299539 False 793 lncRNA 0.47 2 11089077 11091335
XR_003403161.2 False 756 lncRNA 0.46 2 11089065 11091286

Neighbor

gene id symbol gene type direction distance location
atp6ap1lb atp6ap1lb,LOC108275547,LOC103031199,LOC108436292,LOC105890636,LOC107672058,LOC107737620,LOC107560932 coding downstream 39330 11043263 ~ 11049735 (-)
slmapb LOC108276397,LOC108436320 coding downstream 49610 11030067 ~ 11039455 (-)
kctd6b kctd6b,kctd6,LOC108436290,LOC107671957,LOC107737715,LOC107570288,LOC103028649 coding downstream 69350 11016816 ~ 11019715 (-)
dnase1l1 LOC108275786 coding downstream 84469 10999100 ~ 11004596 (-)
flna flna,LOC101154674,LOC108436314,LOC107712729 coding downstream 115290 10942875 ~ 10973775 (-)
LOC113530590 LOC108275622 coding upstream 22944 11114279 ~ 11115673 (-)
apobec2b apobec2,apobec2b,LOC108276433,LOC107657013,LOC107712740,LOC107737624 coding upstream 146917 11238252 ~ 11242304 (-)
si:dkey-109j17.5 LOC108276432,LOC108436326,LOC103033727 coding upstream 156317 11247652 ~ 11254606 (-)
ccdc115 ccdc115 coding upstream 164729 11256064 ~ 11258687 (-)
trnae-uuc_4 NA coding upstream 167708 11259043 ~ 11259114 (-)
LOC113530895 NA non-coding downstream 50097 11037822 ~ 11038968 (-)
G252969 NA non-coding downstream 82448 11005952 ~ 11006617 (-)
G252967 NA non-coding downstream 91629 10994816 ~ 10997436 (-)
G252944 LOC107560942,LOC107672007,LOC107737604 non-coding downstream 176600 10904886 ~ 10912465 (-)
G252921 NA non-coding downstream 222369 10866236 ~ 10866696 (-)
G253174 NA non-coding upstream 173574 11264909 ~ 11265149 (-)
G253383 NA non-coding upstream 262167 11353502 ~ 11354217 (-)
G253385 NA non-coding upstream 268180 11359515 ~ 11361585 (-)
G253384 NA non-coding upstream 271637 11362972 ~ 11364414 (-)
G253444 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 non-coding upstream 439369 11530704 ~ 11533297 (-)
abhd6b LOC108275644,LOC108436291 other downstream 64056 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 73399 11009463 ~ 11015666 (-)
sinup NA other downstream 450347 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 619269 10460694 ~ 10469796 (-)
G252373 NA other downstream 1059072 10029492 ~ 10029993 (-)
LOC113530309 NA other upstream 364685 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 458059 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 747461 11838796 ~ 11859346 (-)
ptk6b LOC108276246 other upstream 1064393 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 1806139 12897474 ~ 12934308 (-)

Expression


Co-expression Network