G253151


Basic Information

Item Value
gene id G253151
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11245898 ~ 11246862 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299681
agtaaactatatatattttacacagatatatatatctttacacttttttcctccaaacatACTCCAAATTTCACCACATCCTATGCAATAGTAGGTAAAACTTGTTTTGCCTAAACTAAGATCAAATACCTTGACACAgagtcacggggagcctggagcctatcccagggaactcggggcacaaggtgagGGACAACCTGGATGGagtgccaatccatcacagggcacaatctcacacacacactcacacactacagacaatctggaaatgccaatcagcctacaccacatgtctttggactgggagagtctgggaaaccagagtacccagaggaaaccaccaaagcacggggagaacatgcaaactctgcacacagggcagaggtgggaattGGACCCCCAACCCCAGCAGTGCAAGGCAAAAGTGCTAATCACTAAGCCACCATTGGGCAAATTGGGTACAGAAATCACTATAACCCAAAATACAGCCATTCTTTTCCATAATTTTTAACACTGACCAAATCCCTCTTTgccaccattcttccaaaaacaaagattttctttgaaataataTACAATGATTATTCCATAAGGATATATTAAGTGGACTGAAATTGTGTTTGAAAAGCATTTTCCAATACAGGAGGACTTGTTTATGAAAAGCAGATAGCTTCAGTGGCATTTTAGATAACTTAGAGtcacactgtaataaaatattatacctccacagttttaaataaacCGGACGGAATTGCAAAACAATATGAacactcatttttaataaaagactGCAACCGTTTAACTATTCATGATATCAAAGTCTATTGCCTTTAGTCCACCttcttcatattctttaattattttactttttcttaTATAGTGGCATTTCTTTCTccaaatgaaatcaaaattgaGTTTATTAATTGCTTTTATCGTTCTAGTTGAAATCGGCAATGAACAGCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299681 True 965 lncRNA 0.38 1 11245898 11246862

Neighbor

gene id symbol gene type direction distance location
guca1b guca1b,LOC107657012,LOC107562461,LOC107560929 coding upstream 17542 11225609 ~ 11228356 (+)
LOC113530897 klhdc8b,LOC107712738,LOC106572099,LOC106566462 coding upstream 22268 11123944 ~ 11223630 (+)
tasorb fam208a coding upstream 142310 11090187 ~ 11103588 (+)
asb14b asb14b,LOC108276494,LOC108436293,LOC107671999,LOC107560887,LOC107737718 coding upstream 157270 11079277 ~ 11088628 (+)
dnah12 dnah12 coding upstream 166624 11051523 ~ 11079274 (+)
trnah-gug_14 NA coding downstream 12985 11259847 ~ 11259918 (+)
ebp ebp,LOC107672060,LOC107712744,LOC107657016 coding downstream 13912 11260774 ~ 11264393 (+)
trnaf-gaa_28 NA coding downstream 20749 11267611 ~ 11267683 (+)
pard6b pard6b,LOC108436329 coding downstream 32967 11279829 ~ 11302003 (+)
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC108436330,LOC107562465 coding downstream 64107 11310969 ~ 11341526 (+)
G253152 NA non-coding upstream 426 11244761 ~ 11245472 (+)
G252996 NA non-coding upstream 141371 11104139 ~ 11104527 (+)
G252966 NA non-coding upstream 206467 11038218 ~ 11039431 (+)
G252955 NA non-coding upstream 246078 10998081 ~ 10999820 (+)
G252903 LOC108249180,LOC108436314,LOC101154674 non-coding upstream 284256 10949669 ~ 10961642 (+)
G253210 NA non-coding downstream 123841 11370703 ~ 11372352 (+)
G253212 NA non-coding downstream 126133 11372995 ~ 11376620 (+)
G253248 NA non-coding downstream 214852 11461714 ~ 11462757 (+)
G253301 NA non-coding downstream 482178 11729040 ~ 11729292 (+)
G253329 NA non-coding downstream 536046 11782908 ~ 11784064 (+)
oard1 oard1 other upstream 8531 11231378 ~ 11237367 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 332302 10872029 ~ 10913596 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other upstream 393370 10843611 ~ 10852528 (+)
si:dkey-32e6.3 LOC108276471 other upstream 466038 10772671 ~ 10779860 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 903470 10270803 ~ 10342428 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 145572 11392434 ~ 11415449 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 223189 11470051 ~ 11479376 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other downstream 236557 11483419 ~ 11507750 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other downstream 347642 11594504 ~ 11640907 (+)
G253367 naca,LOC106571941 other downstream 645288 11892150 ~ 11900364 (+)

Expression


Co-expression Network