G253212


Basic Information

Item Value
gene id G253212
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11372995 ~ 11376620 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299755
ATTTAAGCATCAAAAAGTGCAAACAAACCCAAATATGCCAATATTAAtgcttttggtttttttttagttcactGAAACTCAAGACATGATTGGTTCTCCTTACCATAGATGCGCTGCCAGAGCACCACCAGACCAGTGAAACCGATAAAAAAGAAGATTCCACCCAGCACAGTCTTCCACTCACTGGAGGGCTTCTTCATCTCTGCATACGTGTCTTTAAACATAATCCTGTACACTGaggcacaaaacaaaaactggcTGATGATTGAATAATGTGGGagtacaaataaatgaattattggCAGCTTATTCACACatagaaaatgagagaaatctaaccctttaaagtaaatattactaagaaaatagaaagaaaatcaaatatttaacaaaaccacatcaattattggcacccctagaAATTCCTAGGAATAAAATGCAATGTTATATTAAGAATAAATATATCTCCATCTATctcatatatattttgtatacattatatatacacactgatcagccataacactatgaccacctgcctaatattgtgttggtcccccttttgctgccaaaacagccctgacccatccactagatccctgaaggtgtgctgtggtatctactacaaagacgttaacagcagatcctttaagtcctgtaagttgtgaggtggggcctccatggattggacttgatggccagcacatcccacggatgttcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactctttgtcatgttcctcgaaccattcctgaacaatttttacagtgtggcagcgtgcattatcctgctgaaagaggtcacttccattagggaatactgttgccatgaaggggtgtatctggtctgcaacaatgtttaggtaggtggtatgtgtcaaaatagcatccacatgaatgccaggacccaaagtttcccagcagaacattgcccagagcatcacactgcctccgccagcttgcgttcttcccatagtgcatcctggtgccatctcttccccaggtaaacaatgCACACGCActcggccttccacatgatgtgaaagaaaacgtgatttatcggaccaggccaccttcttctattgctccgtggtccagttctgatgctcacctgtctattgtaggcacttttggcagtggacaggggtcagcatgagcactctgacaggtctgtggctatacagccccatacacagcaagctgcgatgcactgtgtgttctgacacctttctatcatagccagctttaacttttcagcaatttgtgctataatagctcttctgtgggatcagaccagacggactagacttcactccccacgtgaatcagtgagccttgggcgcccatgaccctgtcactagttcacaagttgtccttccttggaccacttttggtatgtactaaccactgcataatgggaacaccccacaaggcctgacgttttaaagatgctctgacccagtcatctagccatcacaattaggccgttgtcaaagtctctctaatgcttacccttgcccatttttcctgtttccaacacatcaacttcgagaaccgactggtcacttgctgcctaatatatctcaacccttgacaggtgctattgtaacgagataatcaatattattcacttcacccatcagtggtcataatgttatggctgatcggtgtatatatctTGATAGTGCATGgacaagagtgcggttatactgaatattggcacagctgtgattcagAGAAATGGACATTATAATCAGGATCAAATACAAACAGGCAATTTTCTCCTCCTTCGAAAGGTTGTTCCATGGTCCTTTCTCCTTCTGTTTCAGACTCTCCTCAGTAGCAGTAAGGGAATTGTTGTAAGGTCTGTCTGGTAGCGGGGAGTCCCGACGATCCCAGTACATGGGCAGAGACATGTCAGCCTGCTGTGACACTTTTGAGTCAGAATGGAGGAAAACATGATCAGTGCAACCGAGTAAAAGAATAACTTGCAAATCTGAAGGCATCAGAGTTGCTTTTACTGCACCCTAAGACAAGAGCATCACCTACTGGATAAATAACCAACACTAGCCACTTTACAGCTACATAAACTGCTTGATCAGTACAGCTAGCACAAAgcatatagtgtaatataaccATTACCGTGGCCATGGCTGGCCATCCTGGTACTAGCCGTGCTGAGAGCTGCCACTGCCCTTCTGGACAACAGCGTTCCCAGTCGTCCTGCAGTCAGGCACAGCATCTGAGACACAAAGgatgaactgtatatatccTTTTCCCGAGGctgatataattaattaaaaataacatgttGAAAGGTAAACATagtccaatctggcaacatAGTGGCCACCACTCAGGCCTGATAGAAACGTGGAAGGGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299755 True 2428 lncRNA 0.44 2 11372995 11376620

Neighbor

gene id symbol gene type direction distance location
bcl2l1 bcl2l1 coding upstream 3271 11344353 ~ 11369724 (+)
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC108436330,LOC107562465 coding upstream 31469 11310969 ~ 11341526 (+)
pard6b pard6b,LOC108436329 coding upstream 70992 11279829 ~ 11302003 (+)
trnaf-gaa_28 NA coding upstream 105312 11267611 ~ 11267683 (+)
ebp ebp,LOC107672060,LOC107712744,LOC107657016 coding upstream 108602 11260774 ~ 11264393 (+)
nsfl1c nsfl1c coding downstream 53218 11429838 ~ 11437645 (+)
trpc4apb trpc4ap,LOC107741324,LOC107737634,LOC107562468,LOC105890651,LOC107672047 coding downstream 67774 11444394 ~ 11453985 (+)
zgc:158296 LOC108275955 coding downstream 132882 11509502 ~ 11512493 (+)
ikbkg ikbkg coding downstream 139769 11516389 ~ 11528319 (+)
ssr4 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 coding downstream 154030 11530650 ~ 11533250 (+)
G253210 NA non-coding upstream 643 11370703 ~ 11372352 (+)
G253151 NA non-coding upstream 126133 11245898 ~ 11246862 (+)
G253152 NA non-coding upstream 127523 11244761 ~ 11245472 (+)
G252996 NA non-coding upstream 268468 11104139 ~ 11104527 (+)
G252966 NA non-coding upstream 333564 11038218 ~ 11039431 (+)
G253248 NA non-coding downstream 85094 11461714 ~ 11462757 (+)
G253301 NA non-coding downstream 352420 11729040 ~ 11729292 (+)
G253329 NA non-coding downstream 406288 11782908 ~ 11784064 (+)
LOC117599271 NA non-coding downstream 420637 11797257 ~ 11799304 (+)
G253548 NA non-coding downstream 562459 11939079 ~ 11941237 (+)
oard1 oard1 other upstream 135628 11231378 ~ 11237367 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 459399 10872029 ~ 10913596 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other upstream 520467 10843611 ~ 10852528 (+)
si:dkey-32e6.3 LOC108276471 other upstream 593135 10772671 ~ 10779860 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 1030567 10270803 ~ 10342428 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 15814 11392434 ~ 11415449 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 93431 11470051 ~ 11479376 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other downstream 106799 11483419 ~ 11507750 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other downstream 217884 11594504 ~ 11640907 (+)
G253367 naca,LOC106571941 other downstream 515530 11892150 ~ 11900364 (+)

Expression


Co-expression Network