G253248


Basic Information

Item Value
gene id G253248
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11461714 ~ 11462757 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299791
tactgaatttaaaaatgaaaaaacatgcagttcTGTGTGTCATattttagctatgtattttttccctgtaattttaagtaaatgattcattttaaagcttggtagtttttaaaagaaaaaaagtatcGTATGGTTATCGATATCGGCTGacactcaaggtttcagtatcagtatcggtatcGGAAAatattattaaagaaaacattttatttgtatcttCATTTTAAGGACGCAAACATGCCAGTGAAGTCCACGCCGTACTTCTGCAAGTCATTCATCACTAAGTAATaagttttttcttcattttaacagttttttttttctttcttttttttttttttttaaaaaaaaaagggtttccAGACGAGCTGCGCTGCTTGAGTCGCACATTGATGAGACAGTACCGTCCAGTCCCTGCGTCTGCGCAGCTCCAGGGTGGCCTCGCGCCACTCACTCAGCTCCATACAGCGGCACGCAGTAAACACTCCGGGCCGCAAGACtcgtcctcacacacacctgcacacattttacagcacacacagacCCAGGTCAGAGAGCATATATAACACTTCGGAAACTATGTCACCTCTCATGAGCACACTTAAATGAAAGATACTGTAATTTACATGGAAGTCTCAAAACAAATTTCCTCAGTCTGTCAGAGGACATTAGGACTTGCGCAGTGGAGTGCACGTGGGTACTGACCTGTAGAAGGCTCCCGGTGGCTCGGCTTGCCCCAGGCGCGCGCTCTGACCCTCTTTTATTGTCTCCCTCAAGGTCAGAGTTGGGCAGAAAGGGGAGAAACGCGCGCGCGCTCTGACCCGCCAGCTCCGCGCTCATTGGCTGCGCGCGCGCACAAAAGGCCAGCGGCATTTTTATCTGCGCTCAGCGCTCTACTGTACGCCGACTATTTTTAAAAGCCGACTGATGTTCGCCGGTGGTGAACATTTCTGCACCGATCTCTACATTGCAATCAAGGTTAAAGTAAGACCCTGACCAAACACGCTAAGATGAAAGCAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299791 True 1022 lncRNA 0.45 2 11461714 11462757

Neighbor

gene id symbol gene type direction distance location
trpc4apb trpc4ap,LOC107741324,LOC107737634,LOC107562468,LOC105890651,LOC107672047 coding upstream 7729 11444394 ~ 11453985 (+)
nsfl1c nsfl1c coding upstream 24069 11429838 ~ 11437645 (+)
bcl2l1 bcl2l1 coding upstream 91990 11344353 ~ 11369724 (+)
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC108436330,LOC107562465 coding upstream 120188 11310969 ~ 11341526 (+)
pard6b pard6b,LOC108436329 coding upstream 159711 11279829 ~ 11302003 (+)
zgc:158296 LOC108275955 coding downstream 46745 11509502 ~ 11512493 (+)
ikbkg ikbkg coding downstream 53632 11516389 ~ 11528319 (+)
ssr4 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 coding downstream 67893 11530650 ~ 11533250 (+)
sephs3 sps2,LOC107560911,LOC108275954 coding downstream 70898 11533655 ~ 11542024 (+)
fam120c fam120c,LOC108436345,LOC107657034,LOC107741318,LOC107672004 coding downstream 137885 11600642 ~ 11620370 (+)
G253212 NA non-coding upstream 85094 11372995 ~ 11376620 (+)
G253210 NA non-coding upstream 89362 11370703 ~ 11372352 (+)
G253151 NA non-coding upstream 214852 11245898 ~ 11246862 (+)
G253152 NA non-coding upstream 216242 11244761 ~ 11245472 (+)
G252996 NA non-coding upstream 357187 11104139 ~ 11104527 (+)
G253301 NA non-coding downstream 266283 11729040 ~ 11729292 (+)
G253329 NA non-coding downstream 320151 11782908 ~ 11784064 (+)
LOC117599271 NA non-coding downstream 334500 11797257 ~ 11799304 (+)
G253548 NA non-coding downstream 476322 11939079 ~ 11941237 (+)
LOC117599216 NA non-coding downstream 483575 11946332 ~ 11974544 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other upstream 46265 11392434 ~ 11415449 (+)
oard1 oard1 other upstream 224347 11231378 ~ 11237367 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 548118 10872029 ~ 10913596 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other upstream 609186 10843611 ~ 10852528 (+)
si:dkey-32e6.3 LOC108276471 other upstream 681854 10772671 ~ 10779860 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 7294 11470051 ~ 11479376 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other downstream 20662 11483419 ~ 11507750 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other downstream 131747 11594504 ~ 11640907 (+)
G253367 naca,LOC106571941 other downstream 429393 11892150 ~ 11900364 (+)
trim101 LOC108276180 other downstream 650865 12113622 ~ 12121372 (+)

Expression


Co-expression Network