hsd17b10 (hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644)


Basic Information

Item Value
gene id hsd17b10
gene name hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11594504 ~ 11640907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299813
CTTGTACTGGCAATTCagtatgttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctgctggTAGAAGGATCACGCTCAGAGGTGTGGCTGCCGGTTTTAGAAGCTGAACCACTGAGTACGAGCAGGAAGCGGTTAAGGCTTTGGGccactgattggaaggttgcaAGTTCAAATCGTAGCACCGTCACTGTTGAGTCCTCATGCACCTCAGCTGTAACCTGTGGAGgCTCCTGAAGAGGATACACCCATGTTTTTTCTGAGGATGGTGTGACCAAATTGGCTGAGCTTTGGTAAGAGGATTTTGTATCCTACTGTAAAACAGCCAAAATTCCTGGCTATGACTTCTTTACTGTTCCTGTCAGTCCAACACTGATTACATGTAGCCTGTATAtggatatttaaatatacagtcaggtccataaatattgggacattgacacaattctaacatttttggctctatacaccaccacaatggatttcaaatgaaacgaacaagatgtgctttaactgcagactgtcagctttaatttgagggtacttacatccaaatcaggtgaacggtgtaggaattacaacagtttgcatatgtgcctcccagtggttggacctgactgtataatgtatatactgtGATAGTTCTAATGATAAAGATGTTATAGTATATCTATCTTCACTCACCTCTAGCAAACGGGTCTGGTTTAAATGCAGATAAAACAGGAAAAGATGGTGAGAAATGTGATGTCTCTCATTTTATGACCTGAGCTGAGTCTTTAACAAACATTATATACACTAGTAAGGCTAGATTCAGTCTGTTTGAGCAAATTAGCTTTGCAATCTTTAGTCTGCTTAACAAGAATATTgaatttttgtctcatttttccCCCCTACCCTGATATTGGGTTTAATGCATTTTTCTCGTGCTCACTTTGATCAGTCTTGACCTGTCAAATTGCACATTCAGCACTCGTCCTGAAGCGACTGCACCTGTAAATCTGCGGTTTCTCCTGCCTCCATGTCATGATCGTGGACTGTGGTGCTGGGGG
>XM_026920141.2
ATGGCGAACATCAGAAACCTCAAGGGAATGGTGGGGCTGGTCACAGGAGGTGCCTCTGGTTTGGGCAGGGCTACAGTGGAGCGGTTGATCAACCACGGAGCGAGCGCTGTAATCCTTGACCTGCCCAGCTCAGACGGCCACAGTGTGGCTTCAGCTCTCGGAGAGCGCTGTGCATTCGCTCCAGCTGATGTAACATCAGAGTCAGATGTGCGCTCAGCTGTGGATTTGGCTAAAGAGAAGTTTGGCCGCCTGGACCTGGCGGTGAACTGCGCTGGTATTGCTGTCGCCGTTAAGACATACAACTTCAAAAAGGACGTCCCTCACAGTCTGGAAGACTTCAGTAGGGTCATCAAtGTAAATATTGCAGGCAGCTTTAATGTAATAAGGCTGGCAGCAGGGATGATGGGCAAGAATGAGCCAGATCCGGATGGACACAGAGGCTGCATCATTAACACAGCCAGCGTTGCAGCTTTTGATGGGCAGGTGGGTCAGGCTGCATACTCTGCGTCTAAAGGTGGTATTGTGGGAATGACTCTTCCAATTGCTCGAGATCTCGCTCCTATGGGCATCCGTGTTGTCACTATTGCTCCAGGTTTGTTCTCTACGCCACTGCTGGCTGGTCTGCCTGAGAAGGTGCAGAGTTTTCTCGCACGACAGGTGCCTTTCCCATCGCGCCTGGGCGATCCCGCTGAGTTCGCTCACCTCGTGACCGCCATTGTTGAAAACCCCATGATCAATGGTGAGGTGATTCGCTTGGATGGAGCCATCCGGATGCAGCCTTAAGAAGGAGAGGGGAAGAGACAACCctgcagactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaatgggtTAATGGAATTGAGCCAGATGAGCATTCCCAGTTTCAGTGTACTGCAGTTCTACTTCTCAGGACTCCCTGAGTTAAGGTTCTTCTGCTTGGTTTTTTTGAAATCACTGGAAATCTGtagatattttttataatgctGCTCTGATTTTCCAAAATTCAACCTGTTTGTGTGAGTAAATTTGCTCTTCAGGCCCGTACCAGGCTTTATACTGTTCTGGGAAGTGCAGTAATAAGATCCTGATCAGATTAGATGCAGGGTGTActgcaaataatcaaataataaataataaaatatcttgCTGAAAAGCT
>XM_034312243.1
ACCAAATTGGCTGAGCTTTGGGAATGGTGGGGCTGGTCACAGGAGGTGCCTCTGGTTTGGGCAGGGCTACAGTGGAGCGGTTGATCAACCACGGAGCGAGCGCTGTAATCCTTGACCTGCCCAGCTCAGACGGCCACAGTGTGGCTTCAGCTCTCGGAGAGCGCTGTGCATTCGCTCCAGCTGATGTAACATCAGAGTCAGATGTGCGCTCAGCTGTGGATTTGGCTAAAGAGAAGTTTGGCCGCCTGGACCTGGCGGTGAACTGCGCTGGTATTGCTGTCGCCGTTAAGACATACAACTTCAAAAAGGACGTCCCTCACAGTCTGGAAGACTTCAGTAGGGTCATCAAtGTAAATATTGCAGGCAGCTTTAATGTAATAAGGCTGGCAGCAGGGATGATGGGCAAGAATGAGCCAGATCCGGATGGACACAGAGGCTGCATCATTAACACAGCCAGCGTTGCAGCTTTTGATGGGCAGGTGGGTCAGGCTGCATACTCTGCGTCTAAAGGTGGTATTGTGGGAATGACTCTTCCAATTGCTCGAGATCTCGCTCCTATGGGCATCCGTGTTGTCACTATTGCTCCAGGTTTGTTCTCTACGCCACTGCTGGCTGGTCTGCCTGAGAAGGTGCAGAGTTTTCTCGCACGACAGGTGCCTTTCCCATCGCGCCTGGGCGATCCCGCTGAGTTCGCTCACCTCGTGACCGCCATTGTTGAAAACCCCATGATCAATGGTGAGGTGATTCGCTTGGATGGAGCCATCCGGATGCAGCCTTAA

Function

symbol description
hsd17b10 Predicted to enable oxidoreductase activity. Is expressed in central nervous system; endoderm; head; immature eye; and paraxial mesoderm. Human ortholog(s) of this gene implicated in chromosome Xp11.22 duplication syndrome; pheochromocytoma; and syndromic X-linked intellectual disability type 10. Orthologous to human HSD17B10 (hydroxysteroid 17-beta dehydrogenase 10).

NR:

description
3-hydroxyacyl-CoA dehydrogenase type-2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008709 cholate 7-alpha-dehydrogenase activity molecular_function
GO:0018454 acetoacetyl-CoA reductase activity molecular_function
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function
GO:0047015 3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity molecular_function
GO:0047022 7-beta-hydroxysteroid dehydrogenase (NADP+) activity molecular_function
GO:0047035 testosterone dehydrogenase (NAD+) activity molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K08683 HSD17B10; 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
TU299813 False 1076 lncRNA 0.42 3 11594504 11633295
XM_026920141.2 True 1160 mRNA 0.49 6 11634605 11640907
XM_034312243.1 False 779 mRNA 0.54 6 11632520 11640530

Neighbor

gene id symbol gene type direction distance location
sephs3 sps2,LOC107560911,LOC108275954 coding upstream 52480 11533655 ~ 11542024 (+)
ssr4 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 coding upstream 61254 11530650 ~ 11533250 (+)
ikbkg ikbkg coding upstream 66185 11516389 ~ 11528319 (+)
zgc:158296 LOC108275955 coding upstream 82011 11509502 ~ 11512493 (+)
trpc4apb trpc4ap,LOC107741324,LOC107737634,LOC107562468,LOC105890651,LOC107672047 coding upstream 140519 11444394 ~ 11453985 (+)
tafa1a fam19a1,fam19a1a,LOC108275576,LOC108436303,LOC107560881,LOC107741340,LOC107657002,LOC107563677 coding downstream 30491 11671398 ~ 11714810 (+)
nucks1b nucks1,LOC108435247,LOC107563650,LOC107737648 coding downstream 111226 11752133 ~ 11757875 (+)
mfsd4ab mfsd4a coding downstream 120292 11761199 ~ 11767193 (+)
lemd1 NA coding downstream 144963 11785870 ~ 11808702 (+)
pm20d1.2 pm20d1 coding downstream 168084 11808991 ~ 11821760 (+)
G253248 NA non-coding upstream 131747 11461714 ~ 11462757 (+)
G253212 NA non-coding upstream 217884 11372995 ~ 11376620 (+)
G253210 NA non-coding upstream 222152 11370703 ~ 11372352 (+)
G253151 NA non-coding upstream 347642 11245898 ~ 11246862 (+)
G253152 NA non-coding upstream 349032 11244761 ~ 11245472 (+)
G253301 NA non-coding downstream 88133 11729040 ~ 11729292 (+)
G253329 NA non-coding downstream 142001 11782908 ~ 11784064 (+)
LOC117599271 NA non-coding downstream 156350 11797257 ~ 11799304 (+)
G253548 NA non-coding downstream 298172 11939079 ~ 11941237 (+)
LOC117599216 NA non-coding downstream 305425 11946332 ~ 11974544 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other upstream 86754 11483419 ~ 11507750 (+)
zgc:103759 LOC108276081,LOC108436299 other upstream 115128 11470051 ~ 11479376 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other upstream 179055 11392434 ~ 11415449 (+)
oard1 oard1 other upstream 357137 11231378 ~ 11237367 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 680908 10872029 ~ 10913596 (+)
G253367 naca,LOC106571941 other downstream 251243 11892150 ~ 11900364 (+)
trim101 LOC108276180 other downstream 472715 12113622 ~ 12121372 (+)
ppdpfb pdpfb,ppdpf,LOC107747982,LOC107563664,LOC107657053,LOC107560892 other downstream 500565 12141472 ~ 12143527 (+)
LOC113530266 dnmt3b,dnmt3bb.2,LOC107559473,LOC107747973,LOC105013881,LOC107603154 other downstream 725706 12366613 ~ 12385996 (+)
rbbp8l rbbp8nl other downstream 1196144 12837051 ~ 12854380 (+)

Expression


Co-expression Network