G253301


Basic Information

Item Value
gene id G253301
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11729040 ~ 11729292 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299869
GCTTATGTGAAACATTTGTGTGGGACAGAAATGTACAAAAGGTATTTTTTATAATTCGTTAATCAGAAGGATGAATTTGTTATTATGCATTGCTATGTAAATCTGGAAATACCTAATGATGCATGGATAcaacaatggatataaaaaacatgtacacatttttgctgatttgcacatttacacaataaaaGAAATTGATTGAAATACATGGCTTTAGGTAAGACCTAATGTCTGTCATCCTAATCATACCTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299869 True 253 lncRNA 0.30 1 11729040 11729292

Neighbor

gene id symbol gene type direction distance location
tafa1a fam19a1,fam19a1a,LOC108275576,LOC108436303,LOC107560881,LOC107741340,LOC107657002,LOC107563677 coding upstream 14230 11671398 ~ 11714810 (+)
fam120c fam120c,LOC108436345,LOC107657034,LOC107741318,LOC107672004 coding upstream 108670 11600642 ~ 11620370 (+)
sephs3 sps2,LOC107560911,LOC108275954 coding upstream 187016 11533655 ~ 11542024 (+)
ssr4 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 coding upstream 195790 11530650 ~ 11533250 (+)
ikbkg ikbkg coding upstream 200721 11516389 ~ 11528319 (+)
nucks1b nucks1,LOC108435247,LOC107563650,LOC107737648 coding downstream 22841 11752133 ~ 11757875 (+)
mfsd4ab mfsd4a coding downstream 31907 11761199 ~ 11767193 (+)
lemd1 NA coding downstream 56578 11785870 ~ 11808702 (+)
pm20d1.2 pm20d1 coding downstream 79699 11808991 ~ 11821760 (+)
tfip11 tfip11,LOC107737658,LOC107671994,LOC107657044,LOC107741308 coding downstream 171106 11900398 ~ 11907918 (+)
G253248 NA non-coding upstream 266283 11461714 ~ 11462757 (+)
G253212 NA non-coding upstream 352420 11372995 ~ 11376620 (+)
G253210 NA non-coding upstream 356688 11370703 ~ 11372352 (+)
G253151 NA non-coding upstream 482178 11245898 ~ 11246862 (+)
G253152 NA non-coding upstream 483568 11244761 ~ 11245472 (+)
G253329 NA non-coding downstream 53616 11782908 ~ 11784064 (+)
LOC117599271 NA non-coding downstream 67965 11797257 ~ 11799304 (+)
G253548 NA non-coding downstream 209787 11939079 ~ 11941237 (+)
LOC117599216 NA non-coding downstream 217040 11946332 ~ 11974544 (+)
LOC113530280 NA non-coding downstream 262348 11991640 ~ 11992121 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other upstream 88133 11594504 ~ 11640907 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other upstream 221290 11483419 ~ 11507750 (+)
zgc:103759 LOC108276081,LOC108436299 other upstream 249664 11470051 ~ 11479376 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other upstream 313591 11392434 ~ 11415449 (+)
oard1 oard1 other upstream 491673 11231378 ~ 11237367 (+)
G253367 naca,LOC106571941 other downstream 162858 11892150 ~ 11900364 (+)
trim101 LOC108276180 other downstream 384330 12113622 ~ 12121372 (+)
ppdpfb pdpfb,ppdpf,LOC107747982,LOC107563664,LOC107657053,LOC107560892 other downstream 412180 12141472 ~ 12143527 (+)
LOC113530266 dnmt3b,dnmt3bb.2,LOC107559473,LOC107747973,LOC105013881,LOC107603154 other downstream 637321 12366613 ~ 12385996 (+)
rbbp8l rbbp8nl other downstream 1107759 12837051 ~ 12854380 (+)

Expression


Co-expression Network