G253385


Basic Information

Item Value
gene id G253385
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11359515 ~ 11361585 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU299973
CCACTTCTAACAGTTTCTAATGTAACATACTGTGTTTTAGACAAAAATGTCTAGCAAACTGTTGGCTAGTGTTTCAGCTATGAGCTGAGGTGTTATGTCCACACATTGCCCCTAACAGATGTCATGAGTCTTACTAacgtttttattttctgatgacCACAGGTTACTGCGTATTGTGCTATAGTTTCGTCAGCGTTTCCACAGGTTCAATAAAGACTGATTAATTAGTGTCATCCGTGACCACTAATTAATGCACCTAGTACTCTGTgtgtgcagcaggtggtgggattcgaAAGCATGGGCTCTAGTTACACCATCACGGTGCGTCACGCAACATGATACGCATTACGTTTAAACATACTGCACATACCAACTGGAAACTTTTGTTTTACGAAAGTCAATAAGGACTAGGgacttcttctttttctggctGTTAAGtctactgataaataaaaaaaaaacctgacatcTGCTTGTCTCAGGCacccaggctactgatttgtccatccctgaGCCATTAACTCGATTACTGAAATctgagaaacacagaacagcatCGCTGTCCCTGAATGTAGCTCAGTTCTATTTCAaattcatcatgttttattggATAAGCTTAGCGGAAACAAGCAGAGCTCTGTTCCACTTGTTCCCCTGAACCGGCCCCCCGAACAGAACAATCAGTGCTGGCAGGAAGGGCAGAACTTCCTGACACTCGCTGGAATGCTGCTTGTCAAAGTTTTTCTTTTGGGGGGAGGTGGGGAAAATCAGCTGATCTGAACCAAAAGAGCTGCTTGAAAGAAGGCATGACCTCAGAGCATACACAGGAAAGCAATTCCTGGATTTGTTCGAGTATTCTCGCTCAGTACATATGACGTCACTTTCACAGAATCGTTTTAACACCAAGGCACAGCAGCTTATGTGAGGCAAAGTAGACGTGGCTTCAACGGTCACAGAACAGGATATGTGACAAGATAGGGCTGGATGAGAATTACAGGGCACTTTCAAGATAGAACAGGACGTGAATAGACGTTTGTCCATTTCATCGATCAAAGAACATCGGTCAATAACGTAGCCTGTGTTTACCAGAGTTACATCATCTTCAATAGTGCTGGTCATCATCTTTATCCCCCACAGGTCAGTGACACCAGCATGACTCAGATCATCACCGATGGGTCACCAGACTTCCAGAGAAGTGAAGGTGGTTACCACATATACCAGCCACTTTAGCAaaaaagcagtttctgaaatcatATCCTGTTTCATAAGCAGCCTCGTATCTCAGTGACATCAGTTCAAACCTGACACATCTCGGTCTTCTTTAAGAAGCAGAAGTGTGTGCAGTTCAGCTTTGTGTACAAAGCATATTATGAGGCAATTCCCCAATGGTACAACGTCTTCTTGCGCACCAAGACAACACACACCTAGATAACAGGGTAGTCTGTTCAAAAATAAATCCTGCTACACAGAGTATATGGACTATTAACCAATCACGAAAATAAAAGAACTAAATGTTTGCTATTATAACGATTTTTCCaaaagaatttaaaagaaatggTACTATGACTTTGATAGTAGAGTGATATGTGATAGCAATATCTTATTATCATCTTTGTGGTTTTTAGCTGACTGTTAACTGAGGAGATTGTTCTTATCTTTATTAATGTTGGGAATATTGTTCGTATTACACCTCTAACGTCTACATGACTCCTGTATGTGTTCAGCGTCAGCAGTATAGTCGTGCCAATAAACCTATCTTGAATTGAAGTGATAGAGAGAGCAAGGCATCTGACAATCTCTCTAAGCGTGAAAGCAATATTAAGGAGAGGAAAATGTTGAGAGGCTTATCTCCCATCACTGTGCTACACAGCACACATCCCTTCCACTATTTTAGGTCATATCTCTAGAGCTTCGTCTAAAGGAGGGTTCCTTTCTGTTACTatggcaatgtgtgtgtgtcaggctgtgtgtgtgagcagtatGTTATGTAGAAGTTAAAGAGGAGATTAATGATGTAGAATAGTGGGACTCAGACACTAAACTGTTCTCCATCTTATTACGGAGATGCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299973 True 2071 lncRNA 0.42 1 11359515 11361585

Neighbor

gene id symbol gene type direction distance location
fkbpl fkbpl coding downstream 81839 11274090 ~ 11277676 (-)
trnan-guu_24 NA coding downstream 86112 11273330 ~ 11273403 (-)
trnae-uuc_4 NA coding downstream 100401 11259043 ~ 11259114 (-)
ccdc115 ccdc115 coding downstream 100828 11256064 ~ 11258687 (-)
si:dkey-109j17.5 LOC108276432,LOC108436326,LOC103033727 coding downstream 104909 11247652 ~ 11254606 (-)
LOC113530844 LOC108275904,LOC108436332 coding upstream 10657 11372242 ~ 11376560 (-)
emp3b LOC108275556,LOC107562456,LOC107671979,LOC107737636,LOC107741326,LOC107560919,LOC108436335,LOC107657024,LOC105894294 coding upstream 76464 11438049 ~ 11444255 (-)
LOC113530846 idh3g,LOC108275983,LOC108436344,LOC108425561 coding upstream 226120 11587705 ~ 11598386 (-)
LOC113530831 LOC108275674,LOC108436304,LOC107657035,LOC107741317,LOC105906744,LOC107560879 coding upstream 356244 11717829 ~ 11725337 (-)
uba3 uba3,LOC108435248 coding upstream 367416 11729001 ~ 11741759 (-)
G253383 NA non-coding downstream 5298 11353502 ~ 11354217 (-)
G253174 NA non-coding downstream 94366 11264909 ~ 11265149 (-)
LOC113530615 fam208a non-coding downstream 268180 11089065 ~ 11091335 (-)
LOC113530895 NA non-coding downstream 320547 11037822 ~ 11038968 (-)
G252969 NA non-coding downstream 352898 11005952 ~ 11006617 (-)
G253384 NA non-coding upstream 1387 11362972 ~ 11364414 (-)
G253444 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 non-coding upstream 169119 11530704 ~ 11533297 (-)
G253430 LOC108275954 non-coding upstream 178596 11540181 ~ 11542479 (-)
G253463 NA non-coding upstream 209840 11571425 ~ 11571624 (-)
G253464 NA non-coding upstream 210235 11571820 ~ 11572019 (-)
abhd6b LOC108275644,LOC108436291 other downstream 334506 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 343849 11009463 ~ 11015666 (-)
sinup NA other downstream 720797 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 889719 10460694 ~ 10469796 (-)
G252373 NA other downstream 1329522 10029492 ~ 10029993 (-)
LOC113530309 NA other upstream 94435 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 187809 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 477211 11838796 ~ 11859346 (-)
ptk6b LOC108276246 other upstream 794143 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 1535889 12897474 ~ 12934308 (-)

Expression


Co-expression Network