G253463


Basic Information

Item Value
gene id G253463
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11571425 ~ 11571624 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU300090
CATAAATCCACCACTGAGGGTCAGTACTTACCCAAACATCACAGATCTCCCACTTATTCACTCCAGCTCTCCCACTCCGGTACAGCACAATTTCAACATCTAAAACAATACCGCTCTTTCCCcatttgtttccttttgttaCTGATCTCTCATATGGACAGATAGGGACCTGGTGGGAGGAAGAACAGAGCTTGGTGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300090 True 200 lncRNA 0.45 1 11571425 11571624

Neighbor

gene id symbol gene type direction distance location
emp3b LOC108275556,LOC107562456,LOC107671979,LOC107737636,LOC107741326,LOC107560919,LOC108436335,LOC107657024,LOC105894294 coding downstream 127170 11438049 ~ 11444255 (-)
LOC113530844 LOC108275904,LOC108436332 coding downstream 194865 11372242 ~ 11376560 (-)
fkbpl fkbpl coding downstream 293749 11274090 ~ 11277676 (-)
trnan-guu_24 NA coding downstream 298022 11273330 ~ 11273403 (-)
trnae-uuc_4 NA coding downstream 312311 11259043 ~ 11259114 (-)
LOC113530846 idh3g,LOC108275983,LOC108436344,LOC108425561 coding upstream 16081 11587705 ~ 11598386 (-)
LOC113530831 LOC108275674,LOC108436304,LOC107657035,LOC107741317,LOC105906744,LOC107560879 coding upstream 146205 11717829 ~ 11725337 (-)
uba3 uba3,LOC108435248 coding upstream 157377 11729001 ~ 11741759 (-)
LOC113530815 LOC108276064,LOC108276065,LOC108276066,LOC108275619 coding upstream 250224 11821848 ~ 11850443 (-)
LOC113530817 LOC108276066,LOC108276064,LOC108276065,LOC108275619 coding upstream 257651 11829275 ~ 11834195 (-)
G253430 LOC108275954 non-coding downstream 28946 11540181 ~ 11542479 (-)
G253444 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 non-coding downstream 38128 11530704 ~ 11533297 (-)
G253384 NA non-coding downstream 207011 11362972 ~ 11364414 (-)
G253385 NA non-coding downstream 209840 11359515 ~ 11361585 (-)
G253383 NA non-coding downstream 217208 11353502 ~ 11354217 (-)
G253464 NA non-coding upstream 196 11571820 ~ 11572019 (-)
G253433 NA non-coding upstream 41616 11613240 ~ 11620395 (-)
G253494 NA non-coding upstream 141373 11712997 ~ 11714753 (-)
G253499 NA non-coding upstream 172326 11743950 ~ 11744158 (-)
G253492 NA non-coding upstream 183581 11755205 ~ 11757930 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 2822 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 108719 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 546416 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 555759 11009463 ~ 11015666 (-)
sinup NA other downstream 932707 10636501 ~ 10638718 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 267172 11838796 ~ 11859346 (-)
ptk6b LOC108276246 other upstream 584104 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 1325850 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 1679516 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 2557339 14128963 ~ 14150581 (-)

Expression


Co-expression Network