G253499


Basic Information

Item Value
gene id G253499
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11743950 ~ 11744158 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU300131
GGCTCACCTGTAGGCCATGGTGATCACTATGTCCAACTACAGTGACTTATTTCAACAATCTCTACTTTTGTCTACACTTGCTGTTTATATCATATGTAGAATGTCAGTGTGCAATACTGGTCACTTTATTTATCAGGACTCTAACTCTCAATGCACTAAAGGTAGAATGTAAATGTGCAATTACTATCTCTGGTCACTTACTCAACTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300131 True 209 lncRNA 0.38 1 11743950 11744158

Neighbor

gene id symbol gene type direction distance location
uba3 uba3,LOC108435248 coding downstream 2191 11729001 ~ 11741759 (-)
LOC113530831 LOC108275674,LOC108436304,LOC107657035,LOC107741317,LOC105906744,LOC107560879 coding downstream 18613 11717829 ~ 11725337 (-)
LOC113530846 idh3g,LOC108275983,LOC108436344,LOC108425561 coding downstream 145564 11587705 ~ 11598386 (-)
emp3b LOC108275556,LOC107562456,LOC107671979,LOC107737636,LOC107741326,LOC107560919,LOC108436335,LOC107657024,LOC105894294 coding downstream 299695 11438049 ~ 11444255 (-)
LOC113530844 LOC108275904,LOC108436332 coding downstream 367390 11372242 ~ 11376560 (-)
LOC113530815 LOC108276064,LOC108276065,LOC108276066,LOC108275619 coding upstream 77690 11821848 ~ 11850443 (-)
LOC113530817 LOC108276066,LOC108276064,LOC108276065,LOC108275619 coding upstream 85117 11829275 ~ 11834195 (-)
nfascb LOC108276480,LOC108435243,LOC107737654,LOC107672057,LOC107741310 coding upstream 118993 11863151 ~ 11884023 (-)
LOC113530663 LOC108275530,LOC108435244,LOC107560901,LOC107671993 coding upstream 140386 11884544 ~ 11892026 (-)
naca naca,LOC106571941 coding upstream 147993 11892151 ~ 11900462 (-)
G253494 NA non-coding downstream 29197 11712997 ~ 11714753 (-)
G253433 NA non-coding downstream 123555 11613240 ~ 11620395 (-)
G253464 NA non-coding downstream 171931 11571820 ~ 11572019 (-)
G253463 NA non-coding downstream 172326 11571425 ~ 11571624 (-)
G253430 LOC108275954 non-coding downstream 201471 11540181 ~ 11542479 (-)
G253492 NA non-coding upstream 11047 11755205 ~ 11757930 (-)
G253509 NA non-coding upstream 33560 11777718 ~ 11777933 (-)
G253538 NA non-coding upstream 160119 11904277 ~ 11904686 (-)
LOC113530483 NA non-coding upstream 399475 12143633 ~ 12150945 (-)
G253749 NA non-coding upstream 473266 12217424 ~ 12217744 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 175347 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 281244 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 718941 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 728284 11009463 ~ 11015666 (-)
sinup NA other downstream 1105232 10636501 ~ 10638718 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 94638 11838796 ~ 11859346 (-)
ptk6b LOC108276246 other upstream 411570 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 1153316 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 1506982 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 2384805 14128963 ~ 14150581 (-)

Expression


Co-expression Network