LOC113530816 (LOC108276066,LOC108276064,LOC108276065,LOC108275619)


Basic Information

Item Value
gene id LOC113530816
gene name LOC108276066,LOC108276064,LOC108276065,LOC108275619
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11838796 ~ 11859346 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU300144
caggTACCTGGACTTCATTAGCGTGATGACGTATGACTTTCATGGGTCTTGGGAAAGTTTCACTGGACACAACAGTCCTCTGTATCAATGGTCTCAGGAAACAGGAGCTCAAATCTACCTTAATACTAATTACTCAATGACATACTGGAAGAATCAGGGTGCTCCAGTGGAGAAGCTGAGGATGGGTTTTGCTACATATGGCAGAACGTTCCAACTGTCGTCTACAGCGAGTGGCCTGGGAGCTCCATCAAGTGGCCCTGCTTCTGCTGGCACCTACAC
>XM_026921157.2
CTGGAAAGGTAGCCAGTGCAAAACTGCATCCACAATGACAAGACTTATTCTACTCACagGCATTTGCCTGTTATTTATTCAACTTGtttcAGCTTATCAGCTTATATGCTACTTCACCAACTGGGCCCAGTACAGACCTGATCCTGTGAAGCATTTGCCTGCCAACATTGATCCTTTCCTGTGCACACATCTGATCTACGCGTTCTCCATCATTGACTCTGCAAATCATCTGGCTACCTACAAGTGGAACGATGAGACTCTCTACCAATCGTTCAATAGTCTGAAGCAAAGTAATCCAAGCTTGAAGACACTTTTGGCTGTTGGAGGATGGAATTTTGGTTCAACtcaATTCTCCACCATGGTGTCCACACAAGCCAACAGAAATACATTCATCCATTCCTCCATCAGCTTTCTCAGAAAGTATGGATTTGATGGCCTGGATCTAGACTGGGAGTATCCTGGAGCAAGCGGCAGTCCTCCAGAGGACAAGCAAAGGTTTACTCTGCTCTGTCAGGAGCTTCGACAAGCCTATGAGGCTGAAAGCAGTGCTACAGGACATCCCCGGCTTATGGTCACAGCTGCAGTGGCTGCTGTGAAATCAACTATAGATGCTGGATATGAAATTGCTGAGATTTCCAAgTACCTGGACTTCATTAGTGTGACAACCTATGACATTCATGGGTCTTGGGAAAGTTTCACTGGACACAACAGTCCTCTGTATCAATGGTCTCAGGAAACAGGAGCTCAAATCTACCTTAATACTAATTACTCAATGACATACTGGAAGAATCAGGGTGCTCCAGTGGAGAAGCTGAGGATGGGTTTTGCTACATATGGCAGAACGTTCCAACTGTCGTCTACAGCGAGTGGCCTGGGAGCTCCATCAAGTGGCCCTGCTTCTGCTGGCACCTACACCGGAGAGCCAGGCTTCTGGTCTTATTATGAGGTCTGCAGCTTCCTTCAAGGAACCAGCGTACAGTGGATCCAGGATCAGAAAGTACCCTATGCCACAAAAGGGGGCCAGTGGGTTGGCTTTGACACCAAGGAGAGTTTTGACACAAAGgtGACCTACCTCAAAGATAATAATTTTGGAGGGGCCATTGTGTGGGCTCTTGATTTGGATGATTTTACTGGACAGTTCTGTGGACTGGGAAAATACCCTCTCATCAACGAGCTCAAGAAACTGCTAAGCAATGgcaataaaattaattacagtatattatcacTTCTAATACTGTTAATTATAATATGAATTCTCCTGAGTTTACAACCTCATCTGCTCCTCCTATGACTCCTCCTGTTGCAGTTCTTATTACACATCCTGCTGaagctcctcctgctcctcttcctgCTACAGTTTCACAGTGGTATTGTGCAGCCAAGAAAGATGGTATCTATACAAATCCTTTTGATAATAAATCTTTCATCCATTGTGCTGCTGgcagaaaatgtgtaaaaccCTGCCCTGCTGGCACTACCTACAATGAGAGCTGCCAGTGCTGCAGCTTGCAATAAAACTGCCACAAGATGTTAGTGAACACATGATGTAGACatgatttaaaatacattagcaACAGATTAGCAAAATATCTGAACAGTTGTCTGAACATGGCTTCATTGGCTTGATActtacaaatattatatttctctatctttaaaaatattgcatagATAATTTATCTATCTAAGTGCTAACTTTATTATCATTGATCTTTACTAACAGGATTTAATTATGATtggtattttttcatttttaattttatatagtATGGGCTCTAAAAACATTATATACTAGACACTCCCACAATTTAAATGCTCTTTTTTCTGTCAGCTGTATTTTTCCAGATTTAGCAATATGCatggtaaataaacataataaaccaCACTTTTATTTCTATGATCAAACCCAAAGGCTTACACTATTTATTAATTCAGCTTGAAGTATAAGTTCATATACCACCAAATTCATAAActgcttctttaaaaaaacactcatcCAGTTATAGCTGGAGAGCTAAGGAGTTGGAGGTGTTGGAGAAGAATCAGATATGACTGAATCTGAAGCTGGATCTGTGGCACACATAAGCACATGGAGGAGTTGCTAGTTTCCCTAATTCATAGCAGTGCAAGGCCAAACAATCTCCAAAAATCTTTGAGCATTTTACTTAATAGCTTTGATTCTTCAAAAGTTCAGGTTAATGGAATGACACTTCATGTGACAAGGCACATCAACAGCATGCCAAATAATCTCTATATAGTGTCACATTctgaaatgttgaaatgtttctttctctccttcattaaaatatcaaaagcGTAGTGGCAGAATACTGTCACAATATGTATAAAGTTGTGTTAAAGCACAAAATGCATGGATTCAAGCTGTGAATTCAGACATCATCCTGCATAGTATGTTCATCAACATAGTTTATTTGCAAATACACAGCAACTATTTGCCCCTGTGTTTGAAGTCATAATcagtcacattttttaaaaatggggaTAATAAAGAAATTTCACATTATATCATATAAGCTGGAATTGGTATGTCAGCACAATGATCATCAATATTAGCAGAGCTCTTGTTATTTCTAGTATCATCATCTCTATCAATACTGATTACCTCATCTAAAAATTGTTAGTAATGTCTGAAGACTAAATTAAGGACAATTCCAACTTCATCTCATTTGCATTAGCACTGTATGATTTTAGTATGAGTTCATACAAGTCAGTCCCCACTACAGTTACTATAACATACAATTTGAATGGGACTCATGTACATCACATTGCTGGAAAGCCACCTTTTTGTCAAAATATGTATAGCAGGCTAAATACCAGATAAAGTAAAGAGACAAGGTTCAGTTCTCATGATTCTTTGGGAACTGTAATCTACCTATGAAGTTTCATAAACcaaacacactcctgtacaaTCCACATAGAATGTAAGATGTAATAGATGTAAGggaataaaattac

Function

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300144 False 279 lncRNA 0.48 3 11841041 11859346
XM_026921157.2 True 2976 mRNA 0.39 11 11838796 11850461

Neighbor

gene id symbol gene type direction distance location
LOC113530817 LOC108276066,LOC108276064,LOC108276065,LOC108275619 coding downstream 4601 11829275 ~ 11834195 (-)
uba3 uba3,LOC108435248 coding downstream 97037 11729001 ~ 11741759 (-)
LOC113530831 LOC108275674,LOC108436304,LOC107657035,LOC107741317,LOC105906744,LOC107560879 coding downstream 113459 11717829 ~ 11725337 (-)
LOC113530846 idh3g,LOC108275983,LOC108436344,LOC108425561 coding downstream 240410 11587705 ~ 11598386 (-)
emp3b LOC108275556,LOC107562456,LOC107671979,LOC107737636,LOC107741326,LOC107560919,LOC108436335,LOC107657024,LOC105894294 coding downstream 394541 11438049 ~ 11444255 (-)
nfascb LOC108276480,LOC108435243,LOC107737654,LOC107672057,LOC107741310 coding upstream 3805 11863151 ~ 11884023 (-)
LOC113530663 LOC108275530,LOC108435244,LOC107560901,LOC107671993 coding upstream 25198 11884544 ~ 11892026 (-)
naca naca,LOC106571941 coding upstream 32805 11892151 ~ 11900462 (-)
LOC113530992 NA coding upstream 33002 11892348 ~ 11892420 (-)
LOC113530993 NA coding upstream 33581 11892927 ~ 11893002 (-)
G253509 NA non-coding downstream 60863 11777718 ~ 11777933 (-)
G253492 NA non-coding downstream 80866 11755205 ~ 11757930 (-)
G253499 NA non-coding downstream 94638 11743950 ~ 11744158 (-)
G253494 NA non-coding downstream 124043 11712997 ~ 11714753 (-)
G253433 NA non-coding downstream 218401 11613240 ~ 11620395 (-)
G253538 NA non-coding upstream 44931 11904277 ~ 11904686 (-)
LOC113530483 NA non-coding upstream 284287 12143633 ~ 12150945 (-)
G253749 NA non-coding upstream 358078 12217424 ~ 12217744 (-)
G253843 NA non-coding upstream 533017 12392363 ~ 12393653 (-)
LOC113530910 NA non-coding upstream 747195 12606541 ~ 12607682 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 270193 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 376090 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 813787 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 823130 11009463 ~ 11015666 (-)
sinup NA other downstream 1200078 10636501 ~ 10638718 (-)
ptk6b LOC108276246 other upstream 296382 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 1038128 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 1391794 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 2269617 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 2839926 14699272 ~ 14704270 (-)

Expression


Co-expression Network